Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26374 | 3' | -65.8 | NC_005345.2 | + | 22517 | 1.1 | 0.000101 |
Target: 5'- gGGUCGCCCGGCCGGGCGCCCGACACGg -3' miRNA: 3'- -CCAGCGGGCCGGCCCGCGGGCUGUGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 18950 | 0.7 | 0.12409 |
Target: 5'- cGUCGCCCGGCaGGGUccgaagcGCUCGcCGCa -3' miRNA: 3'- cCAGCGGGCCGgCCCG-------CGGGCuGUGc -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 15311 | 0.7 | 0.134449 |
Target: 5'- cGUCGCCCGGCUGuaggucGGUGCgUCGGC-CGg -3' miRNA: 3'- cCAGCGGGCCGGC------CCGCG-GGCUGuGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 23570 | 0.65 | 0.273918 |
Target: 5'- cGGccgCGUCCgagcugcggcugcgGGUCGcGGCGUUCGGCGCGa -3' miRNA: 3'- -CCa--GCGGG--------------CCGGC-CCGCGGGCUGUGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 23673 | 0.74 | 0.065998 |
Target: 5'- gGGUCGCggCCGGUCGGGCgGgCCGAgCGCa -3' miRNA: 3'- -CCAGCG--GGCCGGCCCG-CgGGCU-GUGc -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 7034 | 0.74 | 0.065998 |
Target: 5'- cGGUCGaCCGGCCGgcgaucgaGGCgGCCCGGC-CGg -3' miRNA: 3'- -CCAGCgGGCCGGC--------CCG-CGGGCUGuGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 31639 | 0.73 | 0.08106 |
Target: 5'- -cUCGCCCGGCCGgcgaccGGCGgcccgcaguuccuuCCCGACGCc -3' miRNA: 3'- ccAGCGGGCCGGC------CCGC--------------GGGCUGUGc -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 1331 | 0.72 | 0.086163 |
Target: 5'- uGGUUG-CCGGCCGGGUcgcgguaacgcGCCUGcCACGa -3' miRNA: 3'- -CCAGCgGGCCGGCCCG-----------CGGGCuGUGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 4933 | 0.72 | 0.098331 |
Target: 5'- cGUgCGCuCCGGCCGGGUGgCgGuCACGg -3' miRNA: 3'- cCA-GCG-GGCCGGCCCGCgGgCuGUGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 43982 | 0.7 | 0.121224 |
Target: 5'- cGGcUCGCCCGacucGUCGGcCGCCgCGGCGCGu -3' miRNA: 3'- -CC-AGCGGGC----CGGCCcGCGG-GCUGUGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 28157 | 0.71 | 0.106394 |
Target: 5'- cGUCGCCCGGUCGGcGUuCCuCGcCGCGg -3' miRNA: 3'- cCAGCGGGCCGGCC-CGcGG-GCuGUGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 6151 | 0.72 | 0.095775 |
Target: 5'- cGGUCGCaCCGGCucauCGaGGUccccuccgGCCCGGCGCa -3' miRNA: 3'- -CCAGCG-GGCCG----GC-CCG--------CGGGCUGUGc -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 47608 | 0.78 | 0.034479 |
Target: 5'- cGGU-GCCCGGuuGGcucgacGCGCCCGACACc -3' miRNA: 3'- -CCAgCGGGCCggCC------CGCGGGCUGUGc -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 35684 | 0.71 | 0.11211 |
Target: 5'- aGGUCGCCgGGUucgucggucUGGGCaagcuGCCgGACGCGc -3' miRNA: 3'- -CCAGCGGgCCG---------GCCCG-----CGGgCUGUGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 27684 | 0.77 | 0.03641 |
Target: 5'- cGGcCGCgUGaCCGGGCGCgCCGACACGg -3' miRNA: 3'- -CCaGCGgGCcGGCCCGCG-GGCUGUGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 17839 | 0.72 | 0.086163 |
Target: 5'- --cCGCCCGGCCgccGGGC-CCCGGCgACa -3' miRNA: 3'- ccaGCGGGCCGG---CCCGcGGGCUG-UGc -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 27559 | 0.71 | 0.118112 |
Target: 5'- cGGcUCGUCggaccccggCGGCCGGGCGCCgGAUuacCGg -3' miRNA: 3'- -CC-AGCGG---------GCCGGCCCGCGGgCUGu--GC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 46014 | 0.7 | 0.124413 |
Target: 5'- cGUCGgCaCGGCUGugcaguGGCGCCuCGGCGCGa -3' miRNA: 3'- cCAGCgG-GCCGGC------CCGCGG-GCUGUGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 14849 | 0.77 | 0.040594 |
Target: 5'- -cUUGCCgGGCugcagCGGGCGCUCGACGCGg -3' miRNA: 3'- ccAGCGGgCCG-----GCCCGCGGGCUGUGC- -5' |
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26374 | 3' | -65.8 | NC_005345.2 | + | 11568 | 0.74 | 0.069629 |
Target: 5'- -aUCGCCCGGCagcucgacgaCGGGCGCCUcgcgGugGCGu -3' miRNA: 3'- ccAGCGGGCCG----------GCCCGCGGG----CugUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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