miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26374 3' -65.8 NC_005345.2 + 569 0.67 0.216967
Target:  5'- -cUCGCCC-GCCGcgagcucaucGGCGCCCGcaucCGCGa -3'
miRNA:   3'- ccAGCGGGcCGGC----------CCGCGGGCu---GUGC- -5'
26374 3' -65.8 NC_005345.2 + 1331 0.72 0.086163
Target:  5'- uGGUUG-CCGGCCGGGUcgcgguaacgcGCCUGcCACGa -3'
miRNA:   3'- -CCAGCgGGCCGGCCCG-----------CGGGCuGUGC- -5'
26374 3' -65.8 NC_005345.2 + 1383 0.67 0.21171
Target:  5'- cGGUCGUCCGGUCucGGU-CCCgguGACGCGg -3'
miRNA:   3'- -CCAGCGGGCCGGc-CCGcGGG---CUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 2679 0.67 0.201525
Target:  5'- cGGUCGaUgCGGCgGGGCgcgggaucaGCCUGGCgACGg -3'
miRNA:   3'- -CCAGC-GgGCCGgCCCG---------CGGGCUG-UGC- -5'
26374 3' -65.8 NC_005345.2 + 3313 0.66 0.269435
Target:  5'- cGUCGCCCGcGCCGccgccGUGCaCGuCACGg -3'
miRNA:   3'- cCAGCGGGC-CGGCc----CGCGgGCuGUGC- -5'
26374 3' -65.8 NC_005345.2 + 4447 0.71 0.106394
Target:  5'- aGGUCGUguggaggcuCCGGCgGGG-GCCCGGCGg- -3'
miRNA:   3'- -CCAGCG---------GGCCGgCCCgCGGGCUGUgc -5'
26374 3' -65.8 NC_005345.2 + 4933 0.72 0.098331
Target:  5'- cGUgCGCuCCGGCCGGGUGgCgGuCACGg -3'
miRNA:   3'- cCA-GCG-GGCCGGCCCGCgGgCuGUGC- -5'
26374 3' -65.8 NC_005345.2 + 5197 0.69 0.151679
Target:  5'- aGGUcCGCCCcggcacGGCCGGGCagcucGCggccggccugaucgCCGACGCGc -3'
miRNA:   3'- -CCA-GCGGG------CCGGCCCG-----CG--------------GGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 5211 0.69 0.160822
Target:  5'- cGGcCgGCCCGGCgCuacacgccgucgGGGUGCCCGcgguACACGg -3'
miRNA:   3'- -CCaG-CGGGCCG-G------------CCCGCGGGC----UGUGC- -5'
26374 3' -65.8 NC_005345.2 + 5412 0.67 0.201525
Target:  5'- cGGUCGgCCGagcgucucGCCGaguucuucggcGGCGCCCGGguCGg -3'
miRNA:   3'- -CCAGCgGGC--------CGGC-----------CCGCGGGCUguGC- -5'
26374 3' -65.8 NC_005345.2 + 5512 0.66 0.25089
Target:  5'- gGGUCGCuacuaccgcgacCCcGCCgGGGgGCCCGACcUGa -3'
miRNA:   3'- -CCAGCG------------GGcCGG-CCCgCGGGCUGuGC- -5'
26374 3' -65.8 NC_005345.2 + 5597 0.68 0.196594
Target:  5'- --gCGCUCGuGCCgugGGGCGCcgggcucguggCCGACGCGg -3'
miRNA:   3'- ccaGCGGGC-CGG---CCCGCG-----------GGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 5658 0.66 0.263133
Target:  5'- --cCGCCCGG-CGGGC-CCgGAC-CGa -3'
miRNA:   3'- ccaGCGGGCCgGCCCGcGGgCUGuGC- -5'
26374 3' -65.8 NC_005345.2 + 6151 0.72 0.095775
Target:  5'- cGGUCGCaCCGGCucauCGaGGUccccuccgGCCCGGCGCa -3'
miRNA:   3'- -CCAGCG-GGCCG----GC-CCG--------CGGGCUGUGc -5'
26374 3' -65.8 NC_005345.2 + 6179 0.69 0.164533
Target:  5'- --aCGCCCGGCCcGGUucgugcgcgugccGCCCGGCcCGu -3'
miRNA:   3'- ccaGCGGGCCGGcCCG-------------CGGGCUGuGC- -5'
26374 3' -65.8 NC_005345.2 + 6441 0.73 0.079565
Target:  5'- uGGUCGCcgauauCCaGCCGGGUcgcGCCCGGCAUc -3'
miRNA:   3'- -CCAGCG------GGcCGGCCCG---CGGGCUGUGc -5'
26374 3' -65.8 NC_005345.2 + 6986 0.67 0.227816
Target:  5'- ---aGCugCUGGCCGGGCGC-CGACAgGc -3'
miRNA:   3'- ccagCG--GGCCGGCCCGCGgGCUGUgC- -5'
26374 3' -65.8 NC_005345.2 + 7034 0.74 0.065998
Target:  5'- cGGUCGaCCGGCCGgcgaucgaGGCgGCCCGGC-CGg -3'
miRNA:   3'- -CCAGCgGGCCGGC--------CCG-CGGGCUGuGC- -5'
26374 3' -65.8 NC_005345.2 + 8376 0.66 0.25089
Target:  5'- --aCGCCCGcGCCGGccgaccgGCCCGACGa- -3'
miRNA:   3'- ccaGCGGGC-CGGCCcg-----CGGGCUGUgc -5'
26374 3' -65.8 NC_005345.2 + 8795 0.66 0.263133
Target:  5'- -aUCGCCCccacGGCCGuacccGuCGCCCGcCACGg -3'
miRNA:   3'- ccAGCGGG----CCGGCc----C-GCGGGCuGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.