miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26375 3' -54.8 NC_005345.2 + 16205 0.66 0.778638
Target:  5'- cGCCGUgcucCGUCa-GGagGUgGGCGAGGc -3'
miRNA:   3'- -CGGCAa---GCAGgaCCagCAgCUGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 40654 0.66 0.778638
Target:  5'- -aCGUgaaaaauggCGUCCUGGUCcG-CGGgGAGAa -3'
miRNA:   3'- cgGCAa--------GCAGGACCAG-CaGCUgCUCU- -5'
26375 3' -54.8 NC_005345.2 + 5939 0.66 0.768657
Target:  5'- cGCCGUggUCGUUCUcaGGgacagCGgCGugGGGAa -3'
miRNA:   3'- -CGGCA--AGCAGGA--CCa----GCaGCugCUCU- -5'
26375 3' -54.8 NC_005345.2 + 23303 0.66 0.765636
Target:  5'- gGCCGgccgUUGUCCUcGGUccgcgucgggugcgCGcCGACGAGc -3'
miRNA:   3'- -CGGCa---AGCAGGA-CCA--------------GCaGCUGCUCu -5'
26375 3' -54.8 NC_005345.2 + 41842 0.66 0.73793
Target:  5'- cGCCGUcgcaccgcggcUCGUCCUgcGGuUCGccUCGGCGAu- -3'
miRNA:   3'- -CGGCA-----------AGCAGGA--CC-AGC--AGCUGCUcu -5'
26375 3' -54.8 NC_005345.2 + 18300 0.66 0.73793
Target:  5'- cGCUGUUCGUCCucgccgucgcacUGGUCGgcgucacCGGCGc-- -3'
miRNA:   3'- -CGGCAAGCAGG------------ACCAGCa------GCUGCucu -5'
26375 3' -54.8 NC_005345.2 + 24633 0.66 0.73793
Target:  5'- cGCCGggCG-CCUcgcGGUgGUCGACcAGGa -3'
miRNA:   3'- -CGGCaaGCaGGA---CCAgCAGCUGcUCU- -5'
26375 3' -54.8 NC_005345.2 + 33863 0.66 0.727463
Target:  5'- cGCCGaggCGUUC-GG-CGUCGACGuGGg -3'
miRNA:   3'- -CGGCaa-GCAGGaCCaGCAGCUGCuCU- -5'
26375 3' -54.8 NC_005345.2 + 29961 0.66 0.727463
Target:  5'- gGCCGUcgggcucgUCGUCgaGGggcUCGUCGGCGu-- -3'
miRNA:   3'- -CGGCA--------AGCAGgaCC---AGCAGCUGCucu -5'
26375 3' -54.8 NC_005345.2 + 21906 0.66 0.727463
Target:  5'- cGCCccUCGcUCCgGG-CGUCGACGAa- -3'
miRNA:   3'- -CGGcaAGC-AGGaCCaGCAGCUGCUcu -5'
26375 3' -54.8 NC_005345.2 + 23238 0.67 0.716902
Target:  5'- cGCCGgUC-UCCgGGUCGuacUCGACGAu- -3'
miRNA:   3'- -CGGCaAGcAGGaCCAGC---AGCUGCUcu -5'
26375 3' -54.8 NC_005345.2 + 17272 0.67 0.703052
Target:  5'- cGCCGcg-GUCCUGGUCugcgcgcgggucuuGUCGGCcGGAc -3'
miRNA:   3'- -CGGCaagCAGGACCAG--------------CAGCUGcUCU- -5'
26375 3' -54.8 NC_005345.2 + 3328 0.67 0.684769
Target:  5'- cGCCGUgcaCGUCaC-GGUCG-CGACGAcGGa -3'
miRNA:   3'- -CGGCAa--GCAG-GaCCAGCaGCUGCU-CU- -5'
26375 3' -54.8 NC_005345.2 + 43013 0.68 0.65219
Target:  5'- cGCUGUUCuUCCcguacUGcGUCGUCGGCGGc- -3'
miRNA:   3'- -CGGCAAGcAGG-----AC-CAGCAGCUGCUcu -5'
26375 3' -54.8 NC_005345.2 + 37215 0.68 0.65219
Target:  5'- aGCCGUUCGcCCUcGcgUGUCGGCGGc- -3'
miRNA:   3'- -CGGCAAGCaGGAcCa-GCAGCUGCUcu -5'
26375 3' -54.8 NC_005345.2 + 35229 0.68 0.64128
Target:  5'- gGCCGUgggCGg-CUGGuagUCGUCGAUGGGc -3'
miRNA:   3'- -CGGCAa--GCagGACC---AGCAGCUGCUCu -5'
26375 3' -54.8 NC_005345.2 + 11017 0.68 0.619446
Target:  5'- uGCCGUaCuUCCcGGUCGaUGACGGGGc -3'
miRNA:   3'- -CGGCAaGcAGGaCCAGCaGCUGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 44355 0.68 0.60854
Target:  5'- uGCCGgggggcgaUCGUCaccucgaacgGGUCGcCGGCGAGGg -3'
miRNA:   3'- -CGGCa-------AGCAGga--------CCAGCaGCUGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 8356 0.68 0.60854
Target:  5'- cCCGgUCGUCgUGaGU-GUCGGCGAGGu -3'
miRNA:   3'- cGGCaAGCAGgAC-CAgCAGCUGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 21278 0.7 0.533232
Target:  5'- cGCCG-UCGUCCccGUCGUCGGgggcgccgcCGAGGa -3'
miRNA:   3'- -CGGCaAGCAGGacCAGCAGCU---------GCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.