miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26379 3' -54.9 NC_005345.2 + 24210 1.11 0.000784
Target:  5'- gGGCUCGACGUCCUCGACACGGUCAUCu -3'
miRNA:   3'- -CCGAGCUGCAGGAGCUGUGCCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 43285 0.8 0.131801
Target:  5'- uGGCgaCGACGUCCUCGGCGaGGUCGa- -3'
miRNA:   3'- -CCGa-GCUGCAGGAGCUGUgCCAGUag -5'
26379 3' -54.9 NC_005345.2 + 34949 0.78 0.159851
Target:  5'- uGCUCGGCGgacaCCUCGGCGgcguccUGGUCGUCg -3'
miRNA:   3'- cCGAGCUGCa---GGAGCUGU------GCCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 36088 0.77 0.185058
Target:  5'- uGCUCGGCGggcugaaagacaaggUCCUCGACGCGGcCAagUCg -3'
miRNA:   3'- cCGAGCUGC---------------AGGAGCUGUGCCaGU--AG- -5'
26379 3' -54.9 NC_005345.2 + 18515 0.77 0.193175
Target:  5'- cGCUCGGCGUCCUCGGCGCcaugugcaccGGUgGg- -3'
miRNA:   3'- cCGAGCUGCAGGAGCUGUG----------CCAgUag -5'
26379 3' -54.9 NC_005345.2 + 28194 0.77 0.196823
Target:  5'- cGGCUCGAcaacgcgaaggaCGUCCUCGACGacaucaaccugcacCGGUaCGUCg -3'
miRNA:   3'- -CCGAGCU------------GCAGGAGCUGU--------------GCCA-GUAG- -5'
26379 3' -54.9 NC_005345.2 + 19136 0.77 0.198405
Target:  5'- cGCUCGGCGaCCUCGGC-CGGgacgUCGUCg -3'
miRNA:   3'- cCGAGCUGCaGGAGCUGuGCC----AGUAG- -5'
26379 3' -54.9 NC_005345.2 + 3722 0.77 0.198405
Target:  5'- gGGUgccugCGACGUCgaCGACGCGGUCGa- -3'
miRNA:   3'- -CCGa----GCUGCAGgaGCUGUGCCAGUag -5'
26379 3' -54.9 NC_005345.2 + 29983 0.77 0.209236
Target:  5'- gGGCUCGucgGCGUCCUCGGC-CGGg-GUCc -3'
miRNA:   3'- -CCGAGC---UGCAGGAGCUGuGCCagUAG- -5'
26379 3' -54.9 NC_005345.2 + 40730 0.76 0.23243
Target:  5'- cGCUCGGCGUCCagccgcgccccgUCGACcggcaGCGGcUCGUCg -3'
miRNA:   3'- cCGAGCUGCAGG------------AGCUG-----UGCC-AGUAG- -5'
26379 3' -54.9 NC_005345.2 + 38402 0.75 0.244819
Target:  5'- gGGCUCGGCGUCggCGACgacaucgagcGCGGcCAUCc -3'
miRNA:   3'- -CCGAGCUGCAGgaGCUG----------UGCCaGUAG- -5'
26379 3' -54.9 NC_005345.2 + 22996 0.75 0.251217
Target:  5'- gGGCUCGGgGUCCUCGcCGaGGUCGg- -3'
miRNA:   3'- -CCGAGCUgCAGGAGCuGUgCCAGUag -5'
26379 3' -54.9 NC_005345.2 + 29394 0.75 0.264425
Target:  5'- cGGCUCGGCcgccgCCUCGGCcuCGGUCGccUCg -3'
miRNA:   3'- -CCGAGCUGca---GGAGCUGu-GCCAGU--AG- -5'
26379 3' -54.9 NC_005345.2 + 21728 0.75 0.27055
Target:  5'- cGGCaUGAgGUUCUCGACGCGGUaccgcugCGUCg -3'
miRNA:   3'- -CCGaGCUgCAGGAGCUGUGCCA-------GUAG- -5'
26379 3' -54.9 NC_005345.2 + 5618 0.73 0.322896
Target:  5'- gGGCUCGugG-CC--GACGCGGUgAUCg -3'
miRNA:   3'- -CCGAGCugCaGGagCUGUGCCAgUAG- -5'
26379 3' -54.9 NC_005345.2 + 10067 0.73 0.347182
Target:  5'- gGGUUCGACGcCgUCGAgGCGcUCGUCa -3'
miRNA:   3'- -CCGAGCUGCaGgAGCUgUGCcAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 31152 0.73 0.355563
Target:  5'- aGGCggUCGAgG-CCUCGACACGGgagAUCg -3'
miRNA:   3'- -CCG--AGCUgCaGGAGCUGUGCCag-UAG- -5'
26379 3' -54.9 NC_005345.2 + 40342 0.72 0.372747
Target:  5'- cGGC-CGGCGUCUcgUCGugGCGaGUgGUCa -3'
miRNA:   3'- -CCGaGCUGCAGG--AGCugUGC-CAgUAG- -5'
26379 3' -54.9 NC_005345.2 + 16520 0.72 0.390488
Target:  5'- cGGCUUGuCGUCCggcCGGCgaACGGUCuUCu -3'
miRNA:   3'- -CCGAGCuGCAGGa--GCUG--UGCCAGuAG- -5'
26379 3' -54.9 NC_005345.2 + 1362 0.72 0.399563
Target:  5'- uGGgUUGAUGUCCgCGuACAgCGGUCGUCc -3'
miRNA:   3'- -CCgAGCUGCAGGaGC-UGU-GCCAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.