miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26379 3' -54.9 NC_005345.2 + 24210 1.11 0.000784
Target:  5'- gGGCUCGACGUCCUCGACACGGUCAUCu -3'
miRNA:   3'- -CCGAGCUGCAGGAGCUGUGCCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 22178 0.68 0.613982
Target:  5'- cGGCgcugggaUCGGguuCGUCCUCGACggggACGGgaUCGUCu -3'
miRNA:   3'- -CCG-------AGCU---GCAGGAGCUG----UGCC--AGUAG- -5'
26379 3' -54.9 NC_005345.2 + 2017 0.68 0.637034
Target:  5'- aGGCguuccUCGGCGUCCUCGucgaGCGGg---- -3'
miRNA:   3'- -CCG-----AGCUGCAGGAGCug--UGCCaguag -5'
26379 3' -54.9 NC_005345.2 + 42429 0.66 0.758281
Target:  5'- cGGCauaccgaucgucaUCGGCGUCCccacgcgcggcgauaUCGACGCcgaGGcCGUCg -3'
miRNA:   3'- -CCG-------------AGCUGCAGG---------------AGCUGUG---CCaGUAG- -5'
26379 3' -54.9 NC_005345.2 + 5618 0.73 0.322896
Target:  5'- gGGCUCGugG-CC--GACGCGGUgAUCg -3'
miRNA:   3'- -CCGAGCugCaGGagCUGUGCCAgUAG- -5'
26379 3' -54.9 NC_005345.2 + 10067 0.73 0.347182
Target:  5'- gGGUUCGACGcCgUCGAgGCGcUCGUCa -3'
miRNA:   3'- -CCGAGCUGCaGgAGCUgUGCcAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 31601 0.71 0.431402
Target:  5'- uGCUCGGCGcggCCcgcggaucgcauggCGACACGGUCcUCg -3'
miRNA:   3'- cCGAGCUGCa--GGa-------------GCUGUGCCAGuAG- -5'
26379 3' -54.9 NC_005345.2 + 45094 0.7 0.476738
Target:  5'- aGGCauaccgugUCGGCGcUCgUCGGCGCcGUCGUCg -3'
miRNA:   3'- -CCG--------AGCUGC-AGgAGCUGUGcCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 39291 0.69 0.528539
Target:  5'- uGCUCGaccGCGUCCUgaucaccucUGACGuccUGGUCGUCg -3'
miRNA:   3'- cCGAGC---UGCAGGA---------GCUGU---GCCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 30004 0.68 0.604119
Target:  5'- cGGCgaCGACGUCC-CGGCcgaGGUCGc- -3'
miRNA:   3'- -CCGa-GCUGCAGGaGCUGug-CCAGUag -5'
26379 3' -54.9 NC_005345.2 + 14751 0.69 0.549849
Target:  5'- uGGUgucggUGACGUgCUCGAC-CGGgcUCGUCg -3'
miRNA:   3'- -CCGa----GCUGCAgGAGCUGuGCC--AGUAG- -5'
26379 3' -54.9 NC_005345.2 + 1111 0.69 0.528539
Target:  5'- cGGCUCGAUGUgCgcggcccaguUCGACcgcuuccgguugGCGGUCGUg -3'
miRNA:   3'- -CCGAGCUGCAgG----------AGCUG------------UGCCAGUAg -5'
26379 3' -54.9 NC_005345.2 + 36088 0.77 0.185058
Target:  5'- uGCUCGGCGggcugaaagacaaggUCCUCGACGCGGcCAagUCg -3'
miRNA:   3'- cCGAGCUGC---------------AGGAGCUGUGCCaGU--AG- -5'
26379 3' -54.9 NC_005345.2 + 16950 0.69 0.571417
Target:  5'- cGCUCGACGagacgCCUCGGCAccuCGGcCGg- -3'
miRNA:   3'- cCGAGCUGCa----GGAGCUGU---GCCaGUag -5'
26379 3' -54.9 NC_005345.2 + 18515 0.77 0.193175
Target:  5'- cGCUCGGCGUCCUCGGCGCcaugugcaccGGUgGg- -3'
miRNA:   3'- cCGAGCUGCAGGAGCUGUG----------CCAgUag -5'
26379 3' -54.9 NC_005345.2 + 14640 0.7 0.517998
Target:  5'- cGGCccgccUCGaccGCGUCCUCGGCAccggcCGGgcggCGUCg -3'
miRNA:   3'- -CCG-----AGC---UGCAGGAGCUGU-----GCCa---GUAG- -5'
26379 3' -54.9 NC_005345.2 + 33483 0.69 0.571417
Target:  5'- cGGC-CGACGgugCaggUCGGCGCGGagAUCg -3'
miRNA:   3'- -CCGaGCUGCa--Gg--AGCUGUGCCagUAG- -5'
26379 3' -54.9 NC_005345.2 + 28164 0.68 0.626054
Target:  5'- cGgUCGGCGuUCCUCGcCGCGGcCAa- -3'
miRNA:   3'- cCgAGCUGC-AGGAGCuGUGCCaGUag -5'
26379 3' -54.9 NC_005345.2 + 28194 0.77 0.196823
Target:  5'- cGGCUCGAcaacgcgaaggaCGUCCUCGACGacaucaaccugcacCGGUaCGUCg -3'
miRNA:   3'- -CCGAGCU------------GCAGGAGCUGU--------------GCCA-GUAG- -5'
26379 3' -54.9 NC_005345.2 + 31152 0.73 0.355563
Target:  5'- aGGCggUCGAgG-CCUCGACACGGgagAUCg -3'
miRNA:   3'- -CCG--AGCUgCaGGAGCUGUGCCag-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.