miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26379 3' -54.9 NC_005345.2 + 630 0.67 0.680808
Target:  5'- cGGaUCG-CGUCCUCGGCcuGCGG-CGUg -3'
miRNA:   3'- -CCgAGCuGCAGGAGCUG--UGCCaGUAg -5'
26379 3' -54.9 NC_005345.2 + 966 0.66 0.744858
Target:  5'- cGC-CGGCcGUCCUUGACGgCGGcccggagCAUCa -3'
miRNA:   3'- cCGaGCUG-CAGGAGCUGU-GCCa------GUAG- -5'
26379 3' -54.9 NC_005345.2 + 1111 0.69 0.528539
Target:  5'- cGGCUCGAUGUgCgcggcccaguUCGACcgcuuccgguugGCGGUCGUg -3'
miRNA:   3'- -CCGAGCUGCAgG----------AGCUG------------UGCCAGUAg -5'
26379 3' -54.9 NC_005345.2 + 1194 0.66 0.744858
Target:  5'- cGGCUCGGCaGUCCggcccgCGggccacgccGCGCGGUacggGUCc -3'
miRNA:   3'- -CCGAGCUG-CAGGa-----GC---------UGUGCCAg---UAG- -5'
26379 3' -54.9 NC_005345.2 + 1362 0.72 0.399563
Target:  5'- uGGgUUGAUGUCCgCGuACAgCGGUCGUCc -3'
miRNA:   3'- -CCgAGCUGCAGGaGC-UGU-GCCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 1427 0.66 0.723841
Target:  5'- -cCUCGuCGUCCcaguccgaCGGCACGGggUCGUCg -3'
miRNA:   3'- ccGAGCuGCAGGa-------GCUGUGCC--AGUAG- -5'
26379 3' -54.9 NC_005345.2 + 2017 0.68 0.637034
Target:  5'- aGGCguuccUCGGCGUCCUCGucgaGCGGg---- -3'
miRNA:   3'- -CCG-----AGCUGCAGGAGCug--UGCCaguag -5'
26379 3' -54.9 NC_005345.2 + 2773 0.66 0.713191
Target:  5'- cGCgCGGCGgCCUCGGUACGGcUUGUCg -3'
miRNA:   3'- cCGaGCUGCaGGAGCUGUGCC-AGUAG- -5'
26379 3' -54.9 NC_005345.2 + 3385 0.67 0.702461
Target:  5'- gGGCggCGAgGUCC--GGCGCGG-CAUCc -3'
miRNA:   3'- -CCGa-GCUgCAGGagCUGUGCCaGUAG- -5'
26379 3' -54.9 NC_005345.2 + 3722 0.77 0.198405
Target:  5'- gGGUgccugCGACGUCgaCGACGCGGUCGa- -3'
miRNA:   3'- -CCGa----GCUGCAGgaGCUGUGCCAGUag -5'
26379 3' -54.9 NC_005345.2 + 3980 0.69 0.571417
Target:  5'- cGGCUgCGACGUCa--GGCcCGGUCGg- -3'
miRNA:   3'- -CCGA-GCUGCAGgagCUGuGCCAGUag -5'
26379 3' -54.9 NC_005345.2 + 4022 0.66 0.755201
Target:  5'- ---aCGACGUCCUCGACcUGcUCAUg -3'
miRNA:   3'- ccgaGCUGCAGGAGCUGuGCcAGUAg -5'
26379 3' -54.9 NC_005345.2 + 4687 0.68 0.603024
Target:  5'- cGGCUCGACGcCCgugCGGCgaacaggGCGGcgAUCa -3'
miRNA:   3'- -CCGAGCUGCaGGa--GCUG-------UGCCagUAG- -5'
26379 3' -54.9 NC_005345.2 + 5186 0.67 0.702461
Target:  5'- aGGCUcgccCGAgGUCCgcccCGGCACGGcCGg- -3'
miRNA:   3'- -CCGA----GCUgCAGGa---GCUGUGCCaGUag -5'
26379 3' -54.9 NC_005345.2 + 5555 0.67 0.691663
Target:  5'- aGCgugaCGaACGUCCUCGGCACcGG-CGUg -3'
miRNA:   3'- cCGa---GC-UGCAGGAGCUGUG-CCaGUAg -5'
26379 3' -54.9 NC_005345.2 + 5618 0.73 0.322896
Target:  5'- gGGCUCGugG-CC--GACGCGGUgAUCg -3'
miRNA:   3'- -CCGAGCugCaGGagCUGUGCCAgUAG- -5'
26379 3' -54.9 NC_005345.2 + 5666 0.67 0.702461
Target:  5'- cGGCgaUCGAgGUCaccugugcgUCGgugaGCGCGGUCGUCu -3'
miRNA:   3'- -CCG--AGCUgCAGg--------AGC----UGUGCCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 6662 0.67 0.648009
Target:  5'- gGGCgaacgUGGCGaucUCCUCGACgACGGccucggCGUCg -3'
miRNA:   3'- -CCGa----GCUGC---AGGAGCUG-UGCCa-----GUAG- -5'
26379 3' -54.9 NC_005345.2 + 6831 0.67 0.680808
Target:  5'- uGGCg-GGCGggaUCGACAUGGUCcUCg -3'
miRNA:   3'- -CCGagCUGCaggAGCUGUGCCAGuAG- -5'
26379 3' -54.9 NC_005345.2 + 7351 0.69 0.528539
Target:  5'- gGGuCUCGACGUCCggGGCGuCGGUgAg- -3'
miRNA:   3'- -CC-GAGCUGCAGGagCUGU-GCCAgUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.