miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26398 3' -50.2 NC_005345.2 + 19195 0.66 0.931883
Target:  5'- cGACGAGCCcgaCGGCccCGACgUCGAg -3'
miRNA:   3'- -CUGUUCGGcaaGCUGaaGUUGgAGCU- -5'
26398 3' -50.2 NC_005345.2 + 19355 0.66 0.926021
Target:  5'- gGGCGAGCgCGUagUCGuCUUCGAgggaCUCGGc -3'
miRNA:   3'- -CUGUUCG-GCA--AGCuGAAGUUg---GAGCU- -5'
26398 3' -50.2 NC_005345.2 + 10887 0.66 0.926021
Target:  5'- aGGCGGGCUgaGUUCGugUgaccgUCGugUUCGAc -3'
miRNA:   3'- -CUGUUCGG--CAAGCugA-----AGUugGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 1785 0.66 0.913395
Target:  5'- gGGCAGGCCGcUCGAC--CGACCg--- -3'
miRNA:   3'- -CUGUUCGGCaAGCUGaaGUUGGagcu -5'
26398 3' -50.2 NC_005345.2 + 38185 0.66 0.913395
Target:  5'- cGACGGGCaaccuGUUCGACUaCAACaC-CGAg -3'
miRNA:   3'- -CUGUUCGg----CAAGCUGAaGUUG-GaGCU- -5'
26398 3' -50.2 NC_005345.2 + 8886 0.66 0.906633
Target:  5'- -cCGGGCCGUcgUCGACgUCG-CCgUCGAu -3'
miRNA:   3'- cuGUUCGGCA--AGCUGaAGUuGG-AGCU- -5'
26398 3' -50.2 NC_005345.2 + 32020 0.66 0.906633
Target:  5'- cGACcucggGUUCGACcUCGACCUCGGg -3'
miRNA:   3'- -CUGuucggCAAGCUGaAGUUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 5600 0.67 0.899576
Target:  5'- cGGCGAGCUugUCGGCgaCGAgCUCGGc -3'
miRNA:   3'- -CUGUUCGGcaAGCUGaaGUUgGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 1751 0.67 0.899576
Target:  5'- aGGCAGGCgaCGUUUGACcgUCGGCCaUGGg -3'
miRNA:   3'- -CUGUUCG--GCAAGCUGa-AGUUGGaGCU- -5'
26398 3' -50.2 NC_005345.2 + 32081 0.67 0.884591
Target:  5'- gGGCucGGCCucgggcUCGGgUUCGACCUCGGg -3'
miRNA:   3'- -CUGu-UCGGca----AGCUgAAGUUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 10220 0.67 0.884591
Target:  5'- cGGCAAGCaCGaccccgUCGAggUCAAgCUCGAc -3'
miRNA:   3'- -CUGUUCG-GCa-----AGCUgaAGUUgGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 24071 0.67 0.876673
Target:  5'- cGGCGAGCCGaUCGGCcggccgUGGCaCUCGGu -3'
miRNA:   3'- -CUGUUCGGCaAGCUGaa----GUUG-GAGCU- -5'
26398 3' -50.2 NC_005345.2 + 44822 0.67 0.876673
Target:  5'- cGGCucGGCCGaugUCGAgaCgcaggUCGACCUCGGa -3'
miRNA:   3'- -CUGu-UCGGCa--AGCU--Ga----AGUUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 32237 0.67 0.876673
Target:  5'- cAUGAGCCGcagCGGCagCAguGCCUCGAc -3'
miRNA:   3'- cUGUUCGGCaa-GCUGaaGU--UGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 38614 0.67 0.876673
Target:  5'- gGACAcGgCGaucUCGACgUCGGCCUCGGc -3'
miRNA:   3'- -CUGUuCgGCa--AGCUGaAGUUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 24797 0.67 0.868481
Target:  5'- cGGCAagguggugcAGCCGggCGACcggaUCGugCUCGGg -3'
miRNA:   3'- -CUGU---------UCGGCaaGCUGa---AGUugGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 25485 0.67 0.868481
Target:  5'- cGACcGGCCGcgacccuggUCGGCgccgUCcGCCUCGGc -3'
miRNA:   3'- -CUGuUCGGCa--------AGCUGa---AGuUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 16165 0.68 0.860022
Target:  5'- cGCAcGCCGUaggucUCGcGCaggUCGGCCUCGAc -3'
miRNA:   3'- cUGUuCGGCA-----AGC-UGa--AGUUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 45327 0.68 0.860022
Target:  5'- -cCGAGCCGgcgagCuGCUgcgCGGCCUCGAu -3'
miRNA:   3'- cuGUUCGGCaa---GcUGAa--GUUGGAGCU- -5'
26398 3' -50.2 NC_005345.2 + 16473 0.68 0.860022
Target:  5'- --gGGGUCaggUCGACcUCGGCCUCGAc -3'
miRNA:   3'- cugUUCGGca-AGCUGaAGUUGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.