miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26398 5' -58.7 NC_005345.2 + 32679 1.1 0.000436
Target:  5'- aGGCCGAGGUCGACCUGACCCCGUUCGu -3'
miRNA:   3'- -CCGGCUCCAGCUGGACUGGGGCAAGC- -5'
26398 5' -58.7 NC_005345.2 + 42122 0.73 0.203652
Target:  5'- cGCCGGccGGUCGACCggcGACCCgGcgUCGa -3'
miRNA:   3'- cCGGCU--CCAGCUGGa--CUGGGgCa-AGC- -5'
26398 5' -58.7 NC_005345.2 + 12219 0.72 0.262318
Target:  5'- cGCCGcGGUCGGCCggacucUGACCgCCGagUCGa -3'
miRNA:   3'- cCGGCuCCAGCUGG------ACUGG-GGCa-AGC- -5'
26398 5' -58.7 NC_005345.2 + 26749 0.72 0.262318
Target:  5'- cGCCGAGGaacUCGACgaGuCCCCGgcgCGg -3'
miRNA:   3'- cCGGCUCC---AGCUGgaCuGGGGCaa-GC- -5'
26398 5' -58.7 NC_005345.2 + 16474 0.71 0.268886
Target:  5'- gGGUC-AGGUCGACCUcGGCCUCGacggcgUCGa -3'
miRNA:   3'- -CCGGcUCCAGCUGGA-CUGGGGCa-----AGC- -5'
26398 5' -58.7 NC_005345.2 + 31984 0.71 0.275585
Target:  5'- cGGCCucGGGuUCGACCUcGACCUCGggUUCGa -3'
miRNA:   3'- -CCGGc-UCC-AGCUGGA-CUGGGGC--AAGC- -5'
26398 5' -58.7 NC_005345.2 + 26936 0.7 0.311089
Target:  5'- uGGUCGAGGUCaGGCagacGAUCCCGUccccgUCGa -3'
miRNA:   3'- -CCGGCUCCAG-CUGga--CUGGGGCA-----AGC- -5'
26398 5' -58.7 NC_005345.2 + 41682 0.7 0.318594
Target:  5'- cGCCGAGGUCGAUCgcuGCCgCGgUCa -3'
miRNA:   3'- cCGGCUCCAGCUGGac-UGGgGCaAGc -5'
26398 5' -58.7 NC_005345.2 + 24372 0.7 0.326234
Target:  5'- uGCCGAGGUCGGac-GACgCCCGcacUUCGg -3'
miRNA:   3'- cCGGCUCCAGCUggaCUG-GGGC---AAGC- -5'
26398 5' -58.7 NC_005345.2 + 22291 0.7 0.345121
Target:  5'- cGGCCGGGG-CGACgUGGgucgaggugucgcggUCCgGUUCGg -3'
miRNA:   3'- -CCGGCUCCaGCUGgACU---------------GGGgCAAGC- -5'
26398 5' -58.7 NC_005345.2 + 13180 0.7 0.349964
Target:  5'- cGGCCGGGGUcCGACaggaagucaACCCCGcUCa -3'
miRNA:   3'- -CCGGCUCCA-GCUGgac------UGGGGCaAGc -5'
26398 5' -58.7 NC_005345.2 + 30800 0.7 0.349964
Target:  5'- -aCCGAcuGGUCGACCUcGACCCgGgcCGa -3'
miRNA:   3'- ccGGCU--CCAGCUGGA-CUGGGgCaaGC- -5'
26398 5' -58.7 NC_005345.2 + 8600 0.7 0.349964
Target:  5'- uGCCucGGUCGGCCcGaucGCCCCGgUCGg -3'
miRNA:   3'- cCGGcuCCAGCUGGaC---UGGGGCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 47141 0.69 0.358142
Target:  5'- cGCCGAGGaacGCCUGcucACCCUGUUCc -3'
miRNA:   3'- cCGGCUCCagcUGGAC---UGGGGCAAGc -5'
26398 5' -58.7 NC_005345.2 + 30166 0.69 0.366453
Target:  5'- gGGCCGAGGcucgggcaUCGACgCgUGGCgCUCGUUCc -3'
miRNA:   3'- -CCGGCUCC--------AGCUG-G-ACUG-GGGCAAGc -5'
26398 5' -58.7 NC_005345.2 + 9975 0.69 0.38347
Target:  5'- gGGCUGGGGUCcGCCUcGACCaCGUgaaagCGa -3'
miRNA:   3'- -CCGGCUCCAGcUGGA-CUGGgGCAa----GC- -5'
26398 5' -58.7 NC_005345.2 + 14904 0.69 0.38347
Target:  5'- aGGUCGAGGaccgcguucgCGGCCgUGccGCCCCGggCGa -3'
miRNA:   3'- -CCGGCUCCa---------GCUGG-AC--UGGGGCaaGC- -5'
26398 5' -58.7 NC_005345.2 + 29308 0.69 0.391297
Target:  5'- cGGCCGGGaugccuggaagcuGUCGGCC--GCCCCGggugUCa -3'
miRNA:   3'- -CCGGCUC-------------CAGCUGGacUGGGGCa---AGc -5'
26398 5' -58.7 NC_005345.2 + 39530 0.68 0.418126
Target:  5'- cGGCCGAucgagcaGGUCGugCaccGGCCCCGcggcCGg -3'
miRNA:   3'- -CCGGCU-------CCAGCugGa--CUGGGGCaa--GC- -5'
26398 5' -58.7 NC_005345.2 + 8181 0.68 0.419039
Target:  5'- cGCCGAGGUCGAUCgcgaaaGACgCCGc--- -3'
miRNA:   3'- cCGGCUCCAGCUGGa-----CUGgGGCaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.