miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26398 5' -58.7 NC_005345.2 + 32679 1.1 0.000436
Target:  5'- aGGCCGAGGUCGACCUGACCCCGUUCGu -3'
miRNA:   3'- -CCGGCUCCAGCUGGACUGGGGCAAGC- -5'
26398 5' -58.7 NC_005345.2 + 8950 0.67 0.505816
Target:  5'- gGGCUGcgggugcucGGGcUCGACCUGucGCUCCG-UCGa -3'
miRNA:   3'- -CCGGC---------UCC-AGCUGGAC--UGGGGCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 5212 0.66 0.515949
Target:  5'- cGGCCGGgcagcucgcGGcCGGCCUGAUCgCCGacgCGc -3'
miRNA:   3'- -CCGGCU---------CCaGCUGGACUGG-GGCaa-GC- -5'
26398 5' -58.7 NC_005345.2 + 20422 0.66 0.567711
Target:  5'- cGCCGuGGgcgcCGuACCUGcCCCCGUg-- -3'
miRNA:   3'- cCGGCuCCa---GC-UGGACuGGGGCAagc -5'
26398 5' -58.7 NC_005345.2 + 8600 0.7 0.349964
Target:  5'- uGCCucGGUCGGCCcGaucGCCCCGgUCGg -3'
miRNA:   3'- cCGGcuCCAGCUGGaC---UGGGGCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 30800 0.7 0.349964
Target:  5'- -aCCGAcuGGUCGACCUcGACCCgGgcCGa -3'
miRNA:   3'- ccGGCU--CCAGCUGGA-CUGGGgCaaGC- -5'
26398 5' -58.7 NC_005345.2 + 9975 0.69 0.38347
Target:  5'- gGGCUGGGGUCcGCCUcGACCaCGUgaaagCGa -3'
miRNA:   3'- -CCGGCUCCAGcUGGA-CUGGgGCAa----GC- -5'
26398 5' -58.7 NC_005345.2 + 39530 0.68 0.418126
Target:  5'- cGGCCGAucgagcaGGUCGugCaccGGCCCCGcggcCGg -3'
miRNA:   3'- -CCGGCU-------CCAGCugGa--CUGGGGCaa--GC- -5'
26398 5' -58.7 NC_005345.2 + 19167 0.68 0.441319
Target:  5'- cGGCCGAGGacgccgacgagccccUCGAcgacgagcCCgacGGCCCCGacgUCGa -3'
miRNA:   3'- -CCGGCUCC---------------AGCU--------GGa--CUGGGGCa--AGC- -5'
26398 5' -58.7 NC_005345.2 + 38131 0.67 0.485813
Target:  5'- cGGCCGGGGUCGucACCU-ACUUCGagaacgucuacUUCGg -3'
miRNA:   3'- -CCGGCUCCAGC--UGGAcUGGGGC-----------AAGC- -5'
26398 5' -58.7 NC_005345.2 + 36832 0.67 0.456539
Target:  5'- uGGCCGGcGGUgcaGGCCgGACCCUGg-CGg -3'
miRNA:   3'- -CCGGCU-CCAg--CUGGaCUGGGGCaaGC- -5'
26398 5' -58.7 NC_005345.2 + 5533 0.68 0.42824
Target:  5'- cGCCGGGGggccCGACCUGAUCagCGUgaCGa -3'
miRNA:   3'- cCGGCUCCa---GCUGGACUGGg-GCAa-GC- -5'
26398 5' -58.7 NC_005345.2 + 26749 0.72 0.262318
Target:  5'- cGCCGAGGaacUCGACgaGuCCCCGgcgCGg -3'
miRNA:   3'- cCGGCUCC---AGCUGgaCuGGGGCaa-GC- -5'
26398 5' -58.7 NC_005345.2 + 3090 0.67 0.475953
Target:  5'- cGGCCGccuGaUCGACCcucgGGCCCCGgaCa -3'
miRNA:   3'- -CCGGCu--CcAGCUGGa---CUGGGGCaaGc -5'
26398 5' -58.7 NC_005345.2 + 12219 0.72 0.262318
Target:  5'- cGCCGcGGUCGGCCggacucUGACCgCCGagUCGa -3'
miRNA:   3'- cCGGCuCCAGCUGG------ACUGG-GGCa-AGC- -5'
26398 5' -58.7 NC_005345.2 + 47693 0.68 0.419039
Target:  5'- cGGCCGAcggcauccGGUaCGAC--GACCCCGUgccgUCGg -3'
miRNA:   3'- -CCGGCU--------CCA-GCUGgaCUGGGGCA----AGC- -5'
26398 5' -58.7 NC_005345.2 + 34245 0.67 0.485813
Target:  5'- cGGCCGcgaacgcGGuccUCGACCUGACCCUuGacCGg -3'
miRNA:   3'- -CCGGCu------CC---AGCUGGACUGGGG-CaaGC- -5'
26398 5' -58.7 NC_005345.2 + 15644 0.67 0.505816
Target:  5'- cGGUCGGGGccgcaaugCGACCgGGCCCgGUg-- -3'
miRNA:   3'- -CCGGCUCCa-------GCUGGaCUGGGgCAagc -5'
26398 5' -58.7 NC_005345.2 + 22291 0.7 0.345121
Target:  5'- cGGCCGGGG-CGACgUGGgucgaggugucgcggUCCgGUUCGg -3'
miRNA:   3'- -CCGGCUCCaGCUGgACU---------------GGGgCAAGC- -5'
26398 5' -58.7 NC_005345.2 + 30166 0.69 0.366453
Target:  5'- gGGCCGAGGcucgggcaUCGACgCgUGGCgCUCGUUCc -3'
miRNA:   3'- -CCGGCUCC--------AGCUG-G-ACUG-GGGCAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.