miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26398 5' -58.7 NC_005345.2 + 1446 0.67 0.466194
Target:  5'- cGGCaCGGGGUCGucguACCgGAUgCCG-UCGg -3'
miRNA:   3'- -CCG-GCUCCAGC----UGGaCUGgGGCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 3090 0.67 0.475953
Target:  5'- cGGCCGccuGaUCGACCcucgGGCCCCGgaCa -3'
miRNA:   3'- -CCGGCu--CcAGCUGGa---CUGGGGCaaGc -5'
26398 5' -58.7 NC_005345.2 + 4315 0.68 0.437559
Target:  5'- -uCCGAGGUCGACCUGcguCUCGacaUCGg -3'
miRNA:   3'- ccGGCUCCAGCUGGACug-GGGCa--AGC- -5'
26398 5' -58.7 NC_005345.2 + 5212 0.66 0.515949
Target:  5'- cGGCCGGgcagcucgcGGcCGGCCUGAUCgCCGacgCGc -3'
miRNA:   3'- -CCGGCU---------CCaGCUGGACUGG-GGCaa-GC- -5'
26398 5' -58.7 NC_005345.2 + 5533 0.68 0.42824
Target:  5'- cGCCGGGGggccCGACCUGAUCagCGUgaCGa -3'
miRNA:   3'- cCGGCUCCa---GCUGGACUGGg-GCAa-GC- -5'
26398 5' -58.7 NC_005345.2 + 7305 0.66 0.561418
Target:  5'- cGCCGAGGUCGuCCccgaugagucggcgGACgCCGagUCGc -3'
miRNA:   3'- cCGGCUCCAGCuGGa-------------CUGgGGCa-AGC- -5'
26398 5' -58.7 NC_005345.2 + 8181 0.68 0.419039
Target:  5'- cGCCGAGGUCGAUCgcgaaaGACgCCGc--- -3'
miRNA:   3'- cCGGCUCCAGCUGGa-----CUGgGGCaagc -5'
26398 5' -58.7 NC_005345.2 + 8600 0.7 0.349964
Target:  5'- uGCCucGGUCGGCCcGaucGCCCCGgUCGg -3'
miRNA:   3'- cCGGcuCCAGCUGGaC---UGGGGCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 8950 0.67 0.505816
Target:  5'- gGGCUGcgggugcucGGGcUCGACCUGucGCUCCG-UCGa -3'
miRNA:   3'- -CCGGC---------UCC-AGCUGGAC--UGGGGCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 9727 0.68 0.419039
Target:  5'- cGCCGGGGUCGAgCgggucGGCCUCGa--- -3'
miRNA:   3'- cCGGCUCCAGCUgGa----CUGGGGCaagc -5'
26398 5' -58.7 NC_005345.2 + 9975 0.69 0.38347
Target:  5'- gGGCUGGGGUCcGCCUcGACCaCGUgaaagCGa -3'
miRNA:   3'- -CCGGCUCCAGcUGGA-CUGGgGCAa----GC- -5'
26398 5' -58.7 NC_005345.2 + 12219 0.72 0.262318
Target:  5'- cGCCGcGGUCGGCCggacucUGACCgCCGagUCGa -3'
miRNA:   3'- cCGGCuCCAGCUGG------ACUGG-GGCa-AGC- -5'
26398 5' -58.7 NC_005345.2 + 13180 0.7 0.349964
Target:  5'- cGGCCGGGGUcCGACaggaagucaACCCCGcUCa -3'
miRNA:   3'- -CCGGCUCCA-GCUGgac------UGGGGCaAGc -5'
26398 5' -58.7 NC_005345.2 + 14904 0.69 0.38347
Target:  5'- aGGUCGAGGaccgcguucgCGGCCgUGccGCCCCGggCGa -3'
miRNA:   3'- -CCGGCUCCa---------GCUGG-AC--UGGGGCaaGC- -5'
26398 5' -58.7 NC_005345.2 + 14991 0.67 0.466194
Target:  5'- cGGCCGAGGacucggauccgUCGACU--GCCCgGaUCGa -3'
miRNA:   3'- -CCGGCUCC-----------AGCUGGacUGGGgCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 15644 0.67 0.505816
Target:  5'- cGGUCGGGGccgcaaugCGACCgGGCCCgGUg-- -3'
miRNA:   3'- -CCGGCUCCa-------GCUGGaCUGGGgCAagc -5'
26398 5' -58.7 NC_005345.2 + 15978 0.68 0.446993
Target:  5'- cGCCGAGGUCGuCCguACCuCUGUgggCGa -3'
miRNA:   3'- cCGGCUCCAGCuGGacUGG-GGCAa--GC- -5'
26398 5' -58.7 NC_005345.2 + 16474 0.71 0.268886
Target:  5'- gGGUC-AGGUCGACCUcGGCCUCGacggcgUCGa -3'
miRNA:   3'- -CCGGcUCCAGCUGGA-CUGGGGCa-----AGC- -5'
26398 5' -58.7 NC_005345.2 + 17059 0.66 0.546812
Target:  5'- -cCCGAGGUCGaACCcGAgCCCGa--- -3'
miRNA:   3'- ccGGCUCCAGC-UGGaCUgGGGCaagc -5'
26398 5' -58.7 NC_005345.2 + 18001 0.67 0.505816
Target:  5'- uGUCGAGGccUCGACCgccugucgGACgCCGggCGa -3'
miRNA:   3'- cCGGCUCC--AGCUGGa-------CUGgGGCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.