miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26400 3' -55.9 NC_005345.2 + 33164 1.09 0.000759
Target:  5'- gAUGAACCUCGACGCCGCGCACAUCGCc -3'
miRNA:   3'- -UACUUGGAGCUGCGGCGCGUGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 6921 0.81 0.082078
Target:  5'- cGUGucGACCUCGGCGCgCGCGUACAUgucCGCg -3'
miRNA:   3'- -UAC--UUGGAGCUGCG-GCGCGUGUA---GCG- -5'
26400 3' -55.9 NC_005345.2 + 30634 0.78 0.133132
Target:  5'- -cGGACgC-CGACGCCGCGUAC-UCGCu -3'
miRNA:   3'- uaCUUG-GaGCUGCGGCGCGUGuAGCG- -5'
26400 3' -55.9 NC_005345.2 + 47972 0.77 0.153017
Target:  5'- -cGAGCCgccCGuguGCGCCGCGCACGcuccccUCGCg -3'
miRNA:   3'- uaCUUGGa--GC---UGCGGCGCGUGU------AGCG- -5'
26400 3' -55.9 NC_005345.2 + 36835 0.76 0.170826
Target:  5'- --cGACCgaUCGGCGCCGCGCAC-UCGg -3'
miRNA:   3'- uacUUGG--AGCUGCGGCGCGUGuAGCg -5'
26400 3' -55.9 NC_005345.2 + 18994 0.74 0.235727
Target:  5'- -cGAGCCUCGGCccgagcgggGCgGCGCcucgACGUCGCc -3'
miRNA:   3'- uaCUUGGAGCUG---------CGgCGCG----UGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 9081 0.74 0.241981
Target:  5'- -cGGGCCgccgucgcCGGCGaCCGCccGCACGUCGCg -3'
miRNA:   3'- uaCUUGGa-------GCUGC-GGCG--CGUGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 30810 0.74 0.241981
Target:  5'- --cGACCUCGAC-CCGgGCcgACGUCGCg -3'
miRNA:   3'- uacUUGGAGCUGcGGCgCG--UGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 17659 0.73 0.254901
Target:  5'- -cGAugCUCGGCGCCuacgcCGCGC-UCGCc -3'
miRNA:   3'- uaCUugGAGCUGCGGc----GCGUGuAGCG- -5'
26400 3' -55.9 NC_005345.2 + 34351 0.73 0.261571
Target:  5'- --aGACCUCGGCGCCGCaCuguUCGCg -3'
miRNA:   3'- uacUUGGAGCUGCGGCGcGuguAGCG- -5'
26400 3' -55.9 NC_005345.2 + 43491 0.73 0.261571
Target:  5'- gGUG-ACCUCGAuCGCCGC-CAagGUCGCg -3'
miRNA:   3'- -UACuUGGAGCU-GCGGCGcGUg-UAGCG- -5'
26400 3' -55.9 NC_005345.2 + 13676 0.73 0.275336
Target:  5'- ----cCCUCGACGCCGuCGgGCAgcUCGCc -3'
miRNA:   3'- uacuuGGAGCUGCGGC-GCgUGU--AGCG- -5'
26400 3' -55.9 NC_005345.2 + 3809 0.73 0.275336
Target:  5'- -cGGGCagaUCGAgGCCGCGCAgCAgcUCGCc -3'
miRNA:   3'- uaCUUGg--AGCUgCGGCGCGU-GU--AGCG- -5'
26400 3' -55.9 NC_005345.2 + 19880 0.73 0.282433
Target:  5'- -cGAACCgcgcgcCGAUguugcgggcgaGCCGCuGCGCAUCGCg -3'
miRNA:   3'- uaCUUGGa-----GCUG-----------CGGCG-CGUGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 44112 0.73 0.282433
Target:  5'- ----cCCUCGAUGCUGCGCuCGUCGa -3'
miRNA:   3'- uacuuGGAGCUGCGGCGCGuGUAGCg -5'
26400 3' -55.9 NC_005345.2 + 14691 0.72 0.289674
Target:  5'- uUGAacACCUCGAagucguucguCGCCGUguugugcaGCGCGUCGCc -3'
miRNA:   3'- uACU--UGGAGCU----------GCGGCG--------CGUGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 9717 0.72 0.289674
Target:  5'- cGUGAGCC---GCGCCGCGCGgGcCGCg -3'
miRNA:   3'- -UACUUGGagcUGCGGCGCGUgUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 26786 0.72 0.29706
Target:  5'- -cGGAUCguggcCGGCGCCGCGuCGCAggCGCu -3'
miRNA:   3'- uaCUUGGa----GCUGCGGCGC-GUGUa-GCG- -5'
26400 3' -55.9 NC_005345.2 + 22709 0.72 0.304592
Target:  5'- cGUGAGC----AUGUCGCGCACGUCGCu -3'
miRNA:   3'- -UACUUGgagcUGCGGCGCGUGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 11423 0.72 0.304592
Target:  5'- --cGACCagcCGGCGCCGCGCcGCAgCGCg -3'
miRNA:   3'- uacUUGGa--GCUGCGGCGCG-UGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.