miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26400 3' -55.9 NC_005345.2 + 33164 1.09 0.000759
Target:  5'- gAUGAACCUCGACGCCGCGCACAUCGCc -3'
miRNA:   3'- -UACUUGGAGCUGCGGCGCGUGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 45896 0.7 0.397006
Target:  5'- -gGGuACCUCGgcacgaGCGCCGCGUGCAcagugCGCu -3'
miRNA:   3'- uaCU-UGGAGC------UGCGGCGCGUGUa----GCG- -5'
26400 3' -55.9 NC_005345.2 + 45173 0.7 0.425156
Target:  5'- -cGGGCCUCGACGUCGCagccgaGUAUGcCGCc -3'
miRNA:   3'- uaCUUGGAGCUGCGGCG------CGUGUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 11721 0.66 0.669267
Target:  5'- -cGGGCCgc--CGCCGCGUACcaacUCGCc -3'
miRNA:   3'- uaCUUGGagcuGCGGCGCGUGu---AGCG- -5'
26400 3' -55.9 NC_005345.2 + 30810 0.74 0.241981
Target:  5'- --cGACCUCGAC-CCGgGCcgACGUCGCg -3'
miRNA:   3'- uacUUGGAGCUGcGGCgCG--UGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 17659 0.73 0.254901
Target:  5'- -cGAugCUCGGCGCCuacgcCGCGC-UCGCc -3'
miRNA:   3'- uaCUugGAGCUGCGGc----GCGUGuAGCG- -5'
26400 3' -55.9 NC_005345.2 + 43491 0.73 0.261571
Target:  5'- gGUG-ACCUCGAuCGCCGC-CAagGUCGCg -3'
miRNA:   3'- -UACuUGGAGCU-GCGGCGcGUg-UAGCG- -5'
26400 3' -55.9 NC_005345.2 + 13676 0.73 0.275336
Target:  5'- ----cCCUCGACGCCGuCGgGCAgcUCGCc -3'
miRNA:   3'- uacuuGGAGCUGCGGC-GCgUGU--AGCG- -5'
26400 3' -55.9 NC_005345.2 + 11423 0.72 0.304592
Target:  5'- --cGACCagcCGGCGCCGCGCcGCAgCGCg -3'
miRNA:   3'- uacUUGGa--GCUGCGGCGCG-UGUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 2374 0.7 0.387893
Target:  5'- cGUG-ACCUCccCGUCGCGCGcCGUUGCg -3'
miRNA:   3'- -UACuUGGAGcuGCGGCGCGU-GUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 43520 0.71 0.361391
Target:  5'- -cGAACC-CGGCGCuCGCggaGCGgAUCGCc -3'
miRNA:   3'- uaCUUGGaGCUGCG-GCG---CGUgUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 26786 0.72 0.29706
Target:  5'- -cGGAUCguggcCGGCGCCGCGuCGCAggCGCu -3'
miRNA:   3'- uaCUUGGa----GCUGCGGCGC-GUGUa-GCG- -5'
26400 3' -55.9 NC_005345.2 + 30634 0.78 0.133132
Target:  5'- -cGGACgC-CGACGCCGCGUAC-UCGCu -3'
miRNA:   3'- uaCUUG-GaGCUGCGGCGCGUGuAGCG- -5'
26400 3' -55.9 NC_005345.2 + 30400 0.71 0.370084
Target:  5'- -cGuACCUCGACGacgcguCCGCGCuCAUgGCg -3'
miRNA:   3'- uaCuUGGAGCUGC------GGCGCGuGUAgCG- -5'
26400 3' -55.9 NC_005345.2 + 47972 0.77 0.153017
Target:  5'- -cGAGCCgccCGuguGCGCCGCGCACGcuccccUCGCg -3'
miRNA:   3'- uaCUUGGa--GC---UGCGGCGCGUGU------AGCG- -5'
26400 3' -55.9 NC_005345.2 + 9717 0.72 0.289674
Target:  5'- cGUGAGCC---GCGCCGCGCGgGcCGCg -3'
miRNA:   3'- -UACUUGGagcUGCGGCGCGUgUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 27384 0.71 0.378918
Target:  5'- -aGAACUgCG-CGCUGUGCACgAUCGCc -3'
miRNA:   3'- uaCUUGGaGCuGCGGCGCGUG-UAGCG- -5'
26400 3' -55.9 NC_005345.2 + 31594 0.7 0.415641
Target:  5'- -cGGGCCcugcUCGGCGCgGCccGCGgAUCGCa -3'
miRNA:   3'- uaCUUGG----AGCUGCGgCG--CGUgUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 9081 0.74 0.241981
Target:  5'- -cGGGCCgccgucgcCGGCGaCCGCccGCACGUCGCg -3'
miRNA:   3'- uaCUUGGa-------GCUGC-GGCG--CGUGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 34351 0.73 0.261571
Target:  5'- --aGACCUCGGCGCCGCaCuguUCGCg -3'
miRNA:   3'- uacUUGGAGCUGCGGCGcGuguAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.