miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26400 3' -55.9 NC_005345.2 + 249 0.69 0.464473
Target:  5'- -gGAGCCaUCGcCGCC-CGCACcuUCGCc -3'
miRNA:   3'- uaCUUGG-AGCuGCGGcGCGUGu-AGCG- -5'
26400 3' -55.9 NC_005345.2 + 561 0.68 0.495166
Target:  5'- cGUGGGuCCUCGccCGCCGCGagcuCAUCGg -3'
miRNA:   3'- -UACUU-GGAGCu-GCGGCGCgu--GUAGCg -5'
26400 3' -55.9 NC_005345.2 + 1142 0.67 0.569951
Target:  5'- -gGAGCCUgGgacaccaccGCGCCGCGaggggaGCGUgCGCg -3'
miRNA:   3'- uaCUUGGAgC---------UGCGGCGCg-----UGUA-GCG- -5'
26400 3' -55.9 NC_005345.2 + 1709 0.66 0.613969
Target:  5'- uUGGGCCggcgaGACGaCCGacCGCuCGUCGCa -3'
miRNA:   3'- uACUUGGag---CUGC-GGC--GCGuGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 2188 0.69 0.474596
Target:  5'- gGUGcAACgC-CGAUGgCGCGCGCgAUCGCg -3'
miRNA:   3'- -UAC-UUG-GaGCUGCgGCGCGUG-UAGCG- -5'
26400 3' -55.9 NC_005345.2 + 2374 0.7 0.387893
Target:  5'- cGUG-ACCUCccCGUCGCGCGcCGUUGCg -3'
miRNA:   3'- -UACuUGGAGcuGCGGCGCGU-GUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 3341 0.69 0.454463
Target:  5'- -cGGGCUgcgGGCGCCGCGUuCgAUCGCg -3'
miRNA:   3'- uaCUUGGag-CUGCGGCGCGuG-UAGCG- -5'
26400 3' -55.9 NC_005345.2 + 3476 0.68 0.505602
Target:  5'- -gGAcauGCCUCGACGuuacCCGCGCGaggcUCGUg -3'
miRNA:   3'- uaCU---UGGAGCUGC----GGCGCGUgu--AGCG- -5'
26400 3' -55.9 NC_005345.2 + 3809 0.73 0.275336
Target:  5'- -cGGGCagaUCGAgGCCGCGCAgCAgcUCGCc -3'
miRNA:   3'- uaCUUGg--AGCUgCGGCGCGU-GU--AGCG- -5'
26400 3' -55.9 NC_005345.2 + 5033 0.69 0.454463
Target:  5'- -cGAACgUCGACGa-GCGCAgCAUCGa -3'
miRNA:   3'- uaCUUGgAGCUGCggCGCGU-GUAGCg -5'
26400 3' -55.9 NC_005345.2 + 5141 0.67 0.602917
Target:  5'- cAUGAGCgC-CGACaCCGUGCACgagcgacucGUCGCc -3'
miRNA:   3'- -UACUUG-GaGCUGcGGCGCGUG---------UAGCG- -5'
26400 3' -55.9 NC_005345.2 + 5677 0.67 0.591891
Target:  5'- -cGAGCCgaccgCGcuGCGCCGCGaAC-UCGCc -3'
miRNA:   3'- uaCUUGGa----GC--UGCGGCGCgUGuAGCG- -5'
26400 3' -55.9 NC_005345.2 + 6686 0.68 0.495166
Target:  5'- -cGAcgGCCUCGGCGUCGauauCGCcgCGCg -3'
miRNA:   3'- uaCU--UGGAGCUGCGGCgc--GUGuaGCG- -5'
26400 3' -55.9 NC_005345.2 + 6921 0.81 0.082078
Target:  5'- cGUGucGACCUCGGCGCgCGCGUACAUgucCGCg -3'
miRNA:   3'- -UAC--UUGGAGCUGCG-GCGCGUGUA---GCG- -5'
26400 3' -55.9 NC_005345.2 + 7262 0.71 0.370084
Target:  5'- -cGAACCgacaagCGuCGCCGCccGCGCgAUCGCc -3'
miRNA:   3'- uaCUUGGa-----GCuGCGGCG--CGUG-UAGCG- -5'
26400 3' -55.9 NC_005345.2 + 7350 0.68 0.526748
Target:  5'- -aGggUCUCGACGuCCG-GgGCGUCGg -3'
miRNA:   3'- uaCuuGGAGCUGC-GGCgCgUGUAGCg -5'
26400 3' -55.9 NC_005345.2 + 7481 0.67 0.548216
Target:  5'- --cGACCUCGGCGCCGagaaGCcccuCA-CGCu -3'
miRNA:   3'- uacUUGGAGCUGCGGCg---CGu---GUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 7744 0.66 0.658236
Target:  5'- -aGGACCggcUCGAcggcaCGCCGCuGCACGUgaucgacaCGCg -3'
miRNA:   3'- uaCUUGG---AGCU-----GCGGCG-CGUGUA--------GCG- -5'
26400 3' -55.9 NC_005345.2 + 8650 0.71 0.336176
Target:  5'- ---cACCUCGGCGCCGau--CGUCGCg -3'
miRNA:   3'- uacuUGGAGCUGCGGCgcguGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 8973 0.66 0.625036
Target:  5'- --cGGCCUCGAUcgcaGCUGCGCGCcguacaCGCu -3'
miRNA:   3'- uacUUGGAGCUG----CGGCGCGUGua----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.