Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26400 | 5' | -54.3 | NC_005345.2 | + | 33199 | 1.13 | 0.000644 |
Target: 5'- aGCGCGCGAACGAGGGACUCAAGUCACa -3' miRNA: 3'- -CGCGCGCUUGCUCCCUGAGUUCAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 28358 | 0.76 | 0.23304 |
Target: 5'- cCGCGCGcGCGAGGGAUgcgUCAGugacgcGUCACa -3' miRNA: 3'- cGCGCGCuUGCUCCCUG---AGUU------CAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 31720 | 0.74 | 0.29415 |
Target: 5'- gGUGCGCGGACG-GGG-UUCGGGUgCACc -3' miRNA: 3'- -CGCGCGCUUGCuCCCuGAGUUCA-GUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 19360 | 0.73 | 0.349827 |
Target: 5'- aGCGCGUagucgucuuCGAGGGACUCGgcGGUCGu -3' miRNA: 3'- -CGCGCGcuu------GCUCCCUGAGU--UCAGUg -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 35303 | 0.72 | 0.384855 |
Target: 5'- uGUcCGCGAGCGuGGGGACcCGGGUUGCg -3' miRNA: 3'- -CGcGCGCUUGC-UCCCUGaGUUCAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 4365 | 0.72 | 0.393968 |
Target: 5'- gGCGgGCGGGCcgcucgguGGGGGugUC-GGUCACc -3' miRNA: 3'- -CGCgCGCUUG--------CUCCCugAGuUCAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 2479 | 0.72 | 0.403219 |
Target: 5'- uGCGCGCGAGCGA---GCUCGAuGUaCACg -3' miRNA: 3'- -CGCGCGCUUGCUcccUGAGUU-CA-GUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 34624 | 0.7 | 0.481884 |
Target: 5'- gGUGCGCGAguACGGGGcGuggcugcugccGCUCGGcGUCGCg -3' miRNA: 3'- -CGCGCGCU--UGCUCC-C-----------UGAGUU-CAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 23104 | 0.7 | 0.481884 |
Target: 5'- gGCGCucgccgagGCGAGCGAGGcGGCgagUCGGGUCu- -3' miRNA: 3'- -CGCG--------CGCUUGCUCC-CUG---AGUUCAGug -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 2621 | 0.7 | 0.492243 |
Target: 5'- cGCaGCGCGAugGAGcggcgcGGACUgacCGGGUCAa -3' miRNA: 3'- -CG-CGCGCUugCUC------CCUGA---GUUCAGUg -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 23698 | 0.7 | 0.502704 |
Target: 5'- aGCGCacGCGAGCGGuacGGGGCUCugcgcUCGCu -3' miRNA: 3'- -CGCG--CGCUUGCU---CCCUGAGuuc--AGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 46778 | 0.7 | 0.513261 |
Target: 5'- gGCGCGCG-ACG-GGGA----GGUCACg -3' miRNA: 3'- -CGCGCGCuUGCuCCCUgaguUCAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 2614 | 0.7 | 0.513261 |
Target: 5'- uGCGCGCGGACGGagucGGGGC-CGAa-CGCg -3' miRNA: 3'- -CGCGCGCUUGCU----CCCUGaGUUcaGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 24429 | 0.7 | 0.513261 |
Target: 5'- aCGC-CGGGCGAGGG-UUCG-GUCGCg -3' miRNA: 3'- cGCGcGCUUGCUCCCuGAGUuCAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 22795 | 0.69 | 0.556319 |
Target: 5'- cCGCGCGAuccucgGCGGGGGGCg--GGUCu- -3' miRNA: 3'- cGCGCGCU------UGCUCCCUGaguUCAGug -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 31269 | 0.68 | 0.600359 |
Target: 5'- gGUGCGCGggUGcGGGGGCg--GGUgCGCg -3' miRNA: 3'- -CGCGCGCuuGC-UCCCUGaguUCA-GUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 26557 | 0.68 | 0.604797 |
Target: 5'- gGUGCGCGAgcACaucgcgucguucaguGAGGGGCUCGAaUCGg -3' miRNA: 3'- -CGCGCGCU--UG---------------CUCCCUGAGUUcAGUg -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 15379 | 0.68 | 0.610349 |
Target: 5'- cUGCGCGAGCGuccgcAGGGAgUCGuugaccuGGUCGa -3' miRNA: 3'- cGCGCGCUUGC-----UCCCUgAGU-------UCAGUg -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 7600 | 0.68 | 0.633709 |
Target: 5'- aGCGCGCGcACGAcgucgucGAC-CAGGUCGCc -3' miRNA: 3'- -CGCGCGCuUGCUcc-----CUGaGUUCAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 13777 | 0.68 | 0.644835 |
Target: 5'- aGCGCGcCGAACGcGGG-CUUGAGgaCGCu -3' miRNA: 3'- -CGCGC-GCUUGCuCCCuGAGUUCa-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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