miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26400 5' -54.3 NC_005345.2 + 34624 0.7 0.481884
Target:  5'- gGUGCGCGAguACGGGGcGuggcugcugccGCUCGGcGUCGCg -3'
miRNA:   3'- -CGCGCGCU--UGCUCC-C-----------UGAGUU-CAGUG- -5'
26400 5' -54.3 NC_005345.2 + 33199 1.13 0.000644
Target:  5'- aGCGCGCGAACGAGGGACUCAAGUCACa -3'
miRNA:   3'- -CGCGCGCUUGCUCCCUGAGUUCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 45704 0.67 0.689117
Target:  5'- cCGCGCGAGCucGGGGCcCGcaUCGCc -3'
miRNA:   3'- cGCGCGCUUGcuCCCUGaGUucAGUG- -5'
26400 5' -54.3 NC_005345.2 + 16422 0.67 0.689117
Target:  5'- aGCGgGCccacgcCGAGGGACUCGgcuGGuUCGCc -3'
miRNA:   3'- -CGCgCGcuu---GCUCCCUGAGU---UC-AGUG- -5'
26400 5' -54.3 NC_005345.2 + 26557 0.68 0.604797
Target:  5'- gGUGCGCGAgcACaucgcgucguucaguGAGGGGCUCGAaUCGg -3'
miRNA:   3'- -CGCGCGCU--UG---------------CUCCCUGAGUUcAGUg -5'
26400 5' -54.3 NC_005345.2 + 22795 0.69 0.556319
Target:  5'- cCGCGCGAuccucgGCGGGGGGCg--GGUCu- -3'
miRNA:   3'- cGCGCGCU------UGCUCCCUGaguUCAGug -5'
26400 5' -54.3 NC_005345.2 + 29281 0.66 0.743117
Target:  5'- gGCGCGCGGuuCGAGGucGCcCGAGgcagCGCg -3'
miRNA:   3'- -CGCGCGCUu-GCUCCc-UGaGUUCa---GUG- -5'
26400 5' -54.3 NC_005345.2 + 23298 0.67 0.710966
Target:  5'- gGCGC-CGAAgccCGAGGGGCggAAGgCGCg -3'
miRNA:   3'- -CGCGcGCUU---GCUCCCUGagUUCaGUG- -5'
26400 5' -54.3 NC_005345.2 + 7600 0.68 0.633709
Target:  5'- aGCGCGCGcACGAcgucgucGAC-CAGGUCGCc -3'
miRNA:   3'- -CGCGCGCuUGCUcc-----CUGaGUUCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 24429 0.7 0.513261
Target:  5'- aCGC-CGGGCGAGGG-UUCG-GUCGCg -3'
miRNA:   3'- cGCGcGCUUGCUCCCuGAGUuCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 2621 0.7 0.492243
Target:  5'- cGCaGCGCGAugGAGcggcgcGGACUgacCGGGUCAa -3'
miRNA:   3'- -CG-CGCGCUugCUC------CCUGA---GUUCAGUg -5'
26400 5' -54.3 NC_005345.2 + 39592 0.66 0.743117
Target:  5'- gGUGCGCGGggacuACGAGGGgcaGCUCGGcGUguggacccgCACg -3'
miRNA:   3'- -CGCGCGCU-----UGCUCCC---UGAGUU-CA---------GUG- -5'
26400 5' -54.3 NC_005345.2 + 23698 0.7 0.502704
Target:  5'- aGCGCacGCGAGCGGuacGGGGCUCugcgcUCGCu -3'
miRNA:   3'- -CGCG--CGCUUGCU---CCCUGAGuuc--AGUG- -5'
26400 5' -54.3 NC_005345.2 + 32810 0.67 0.710966
Target:  5'- -gGCGCGuuccGCGAGGcACUCGGGaaGCa -3'
miRNA:   3'- cgCGCGCu---UGCUCCcUGAGUUCagUG- -5'
26400 5' -54.3 NC_005345.2 + 8943 0.66 0.763996
Target:  5'- cGUGgGCGGgcuGCGGGugcucGGGCUCGAccuGUCGCu -3'
miRNA:   3'- -CGCgCGCU---UGCUC-----CCUGAGUU---CAGUG- -5'
26400 5' -54.3 NC_005345.2 + 23104 0.7 0.481884
Target:  5'- gGCGCucgccgagGCGAGCGAGGcGGCgagUCGGGUCu- -3'
miRNA:   3'- -CGCG--------CGCUUGCUCC-CUG---AGUUCAGug -5'
26400 5' -54.3 NC_005345.2 + 4365 0.72 0.393968
Target:  5'- gGCGgGCGGGCcgcucgguGGGGGugUC-GGUCACc -3'
miRNA:   3'- -CGCgCGCUUG--------CUCCCugAGuUCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 2479 0.72 0.403219
Target:  5'- uGCGCGCGAGCGA---GCUCGAuGUaCACg -3'
miRNA:   3'- -CGCGCGCUUGCUcccUGAGUU-CA-GUG- -5'
26400 5' -54.3 NC_005345.2 + 2614 0.7 0.513261
Target:  5'- uGCGCGCGGACGGagucGGGGC-CGAa-CGCg -3'
miRNA:   3'- -CGCGCGCUUGCU----CCCUGaGUUcaGUG- -5'
26400 5' -54.3 NC_005345.2 + 46778 0.7 0.513261
Target:  5'- gGCGCGCG-ACG-GGGA----GGUCACg -3'
miRNA:   3'- -CGCGCGCuUGCuCCCUgaguUCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.