miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26400 5' -54.3 NC_005345.2 + 5259 0.66 0.743117
Target:  5'- gGCGUGaCGGGCGgcagGGcGGGCUCGggGGUCGg -3'
miRNA:   3'- -CGCGC-GCUUGC----UC-CCUGAGU--UCAGUg -5'
26400 5' -54.3 NC_005345.2 + 21387 0.66 0.721778
Target:  5'- gGUGCGCGggUGAcGGGGCa-GAGU-GCg -3'
miRNA:   3'- -CGCGCGCuuGCU-CCCUGagUUCAgUG- -5'
26400 5' -54.3 NC_005345.2 + 34922 0.67 0.710966
Target:  5'- gGCGUGCGcagggcggcGGCGAGGGccuGCUCGgcGGaCACc -3'
miRNA:   3'- -CGCGCGC---------UUGCUCCC---UGAGU--UCaGUG- -5'
26400 5' -54.3 NC_005345.2 + 43975 0.67 0.710966
Target:  5'- uCGgGCGAGCcuucGAGGGcgGCgaCGAGUCGCu -3'
miRNA:   3'- cGCgCGCUUG----CUCCC--UGa-GUUCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 32534 0.67 0.678102
Target:  5'- gGCGUGCaugccGAcgcCGAGGGGgUCGGGcCACg -3'
miRNA:   3'- -CGCGCG-----CUu--GCUCCCUgAGUUCaGUG- -5'
26400 5' -54.3 NC_005345.2 + 21855 0.67 0.65595
Target:  5'- uGCGUGCGGGCGAGcug--CAGGUCGg -3'
miRNA:   3'- -CGCGCGCUUGCUCccugaGUUCAGUg -5'
26400 5' -54.3 NC_005345.2 + 13777 0.68 0.644835
Target:  5'- aGCGCGcCGAACGcGGG-CUUGAGgaCGCu -3'
miRNA:   3'- -CGCGC-GCUUGCuCCCuGAGUUCa-GUG- -5'
26400 5' -54.3 NC_005345.2 + 15379 0.68 0.610349
Target:  5'- cUGCGCGAGCGuccgcAGGGAgUCGuugaccuGGUCGa -3'
miRNA:   3'- cGCGCGCUUGC-----UCCCUgAGU-------UCAGUg -5'
26400 5' -54.3 NC_005345.2 + 31269 0.68 0.600359
Target:  5'- gGUGCGCGggUGcGGGGGCg--GGUgCGCg -3'
miRNA:   3'- -CGCGCGCuuGC-UCCCUGaguUCA-GUG- -5'
26400 5' -54.3 NC_005345.2 + 46778 0.7 0.513261
Target:  5'- gGCGCGCG-ACG-GGGA----GGUCACg -3'
miRNA:   3'- -CGCGCGCuUGCuCCCUgaguUCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 2614 0.7 0.513261
Target:  5'- uGCGCGCGGACGGagucGGGGC-CGAa-CGCg -3'
miRNA:   3'- -CGCGCGCUUGCU----CCCUGaGUUcaGUG- -5'
26400 5' -54.3 NC_005345.2 + 2479 0.72 0.403219
Target:  5'- uGCGCGCGAGCGA---GCUCGAuGUaCACg -3'
miRNA:   3'- -CGCGCGCUUGCUcccUGAGUU-CA-GUG- -5'
26400 5' -54.3 NC_005345.2 + 4365 0.72 0.393968
Target:  5'- gGCGgGCGGGCcgcucgguGGGGGugUC-GGUCACc -3'
miRNA:   3'- -CGCgCGCUUG--------CUCCCugAGuUCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 35303 0.72 0.384855
Target:  5'- uGUcCGCGAGCGuGGGGACcCGGGUUGCg -3'
miRNA:   3'- -CGcGCGCUUGC-UCCCUGaGUUCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 43440 0.66 0.75362
Target:  5'- cGCuCGCuguuguGGCGAGGGACggcggCGAGUuCGCg -3'
miRNA:   3'- -CGcGCGc-----UUGCUCCCUGa----GUUCA-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.