Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26400 | 5' | -54.3 | NC_005345.2 | + | 28358 | 0.76 | 0.23304 |
Target: 5'- cCGCGCGcGCGAGGGAUgcgUCAGugacgcGUCACa -3' miRNA: 3'- cGCGCGCuUGCUCCCUG---AGUU------CAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 29281 | 0.66 | 0.743117 |
Target: 5'- gGCGCGCGGuuCGAGGucGCcCGAGgcagCGCg -3' miRNA: 3'- -CGCGCGCUu-GCUCCc-UGaGUUCa---GUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 31269 | 0.68 | 0.600359 |
Target: 5'- gGUGCGCGggUGcGGGGGCg--GGUgCGCg -3' miRNA: 3'- -CGCGCGCuuGC-UCCCUGaguUCA-GUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 31720 | 0.74 | 0.29415 |
Target: 5'- gGUGCGCGGACG-GGG-UUCGGGUgCACc -3' miRNA: 3'- -CGCGCGCUUGCuCCCuGAGUUCA-GUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 32534 | 0.67 | 0.678102 |
Target: 5'- gGCGUGCaugccGAcgcCGAGGGGgUCGGGcCACg -3' miRNA: 3'- -CGCGCG-----CUu--GCUCCCUgAGUUCaGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 32810 | 0.67 | 0.710966 |
Target: 5'- -gGCGCGuuccGCGAGGcACUCGGGaaGCa -3' miRNA: 3'- cgCGCGCu---UGCUCCcUGAGUUCagUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 33199 | 1.13 | 0.000644 |
Target: 5'- aGCGCGCGAACGAGGGACUCAAGUCACa -3' miRNA: 3'- -CGCGCGCUUGCUCCCUGAGUUCAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 34624 | 0.7 | 0.481884 |
Target: 5'- gGUGCGCGAguACGGGGcGuggcugcugccGCUCGGcGUCGCg -3' miRNA: 3'- -CGCGCGCU--UGCUCC-C-----------UGAGUU-CAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 34922 | 0.67 | 0.710966 |
Target: 5'- gGCGUGCGcagggcggcGGCGAGGGccuGCUCGgcGGaCACc -3' miRNA: 3'- -CGCGCGC---------UUGCUCCC---UGAGU--UCaGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 35303 | 0.72 | 0.384855 |
Target: 5'- uGUcCGCGAGCGuGGGGACcCGGGUUGCg -3' miRNA: 3'- -CGcGCGCUUGC-UCCCUGaGUUCAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 39592 | 0.66 | 0.743117 |
Target: 5'- gGUGCGCGGggacuACGAGGGgcaGCUCGGcGUguggacccgCACg -3' miRNA: 3'- -CGCGCGCU-----UGCUCCC---UGAGUU-CA---------GUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 43440 | 0.66 | 0.75362 |
Target: 5'- cGCuCGCuguuguGGCGAGGGACggcggCGAGUuCGCg -3' miRNA: 3'- -CGcGCGc-----UUGCUCCCUGa----GUUCA-GUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 43975 | 0.67 | 0.710966 |
Target: 5'- uCGgGCGAGCcuucGAGGGcgGCgaCGAGUCGCu -3' miRNA: 3'- cGCgCGCUUG----CUCCC--UGa-GUUCAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 45704 | 0.67 | 0.689117 |
Target: 5'- cCGCGCGAGCucGGGGCcCGcaUCGCc -3' miRNA: 3'- cGCGCGCUUGcuCCCUGaGUucAGUG- -5' |
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26400 | 5' | -54.3 | NC_005345.2 | + | 46778 | 0.7 | 0.513261 |
Target: 5'- gGCGCGCG-ACG-GGGA----GGUCACg -3' miRNA: 3'- -CGCGCGCuUGCuCCCUgaguUCAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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