miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26400 5' -54.3 NC_005345.2 + 1175 0.66 0.743117
Target:  5'- cGUGCGCGGcgcacACGGGcGGCUCGgcAGUC-Cg -3'
miRNA:   3'- -CGCGCGCU-----UGCUCcCUGAGU--UCAGuG- -5'
26400 5' -54.3 NC_005345.2 + 2479 0.72 0.403219
Target:  5'- uGCGCGCGAGCGA---GCUCGAuGUaCACg -3'
miRNA:   3'- -CGCGCGCUUGCUcccUGAGUU-CA-GUG- -5'
26400 5' -54.3 NC_005345.2 + 2614 0.7 0.513261
Target:  5'- uGCGCGCGGACGGagucGGGGC-CGAa-CGCg -3'
miRNA:   3'- -CGCGCGCUUGCU----CCCUGaGUUcaGUG- -5'
26400 5' -54.3 NC_005345.2 + 2621 0.7 0.492243
Target:  5'- cGCaGCGCGAugGAGcggcgcGGACUgacCGGGUCAa -3'
miRNA:   3'- -CG-CGCGCUugCUC------CCUGA---GUUCAGUg -5'
26400 5' -54.3 NC_005345.2 + 4365 0.72 0.393968
Target:  5'- gGCGgGCGGGCcgcucgguGGGGGugUC-GGUCACc -3'
miRNA:   3'- -CGCgCGCUUG--------CUCCCugAGuUCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 5259 0.66 0.743117
Target:  5'- gGCGUGaCGGGCGgcagGGcGGGCUCGggGGUCGg -3'
miRNA:   3'- -CGCGC-GCUUGC----UC-CCUGAGU--UCAGUg -5'
26400 5' -54.3 NC_005345.2 + 7600 0.68 0.633709
Target:  5'- aGCGCGCGcACGAcgucgucGAC-CAGGUCGCc -3'
miRNA:   3'- -CGCGCGCuUGCUcc-----CUGaGUUCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 8943 0.66 0.763996
Target:  5'- cGUGgGCGGgcuGCGGGugcucGGGCUCGAccuGUCGCu -3'
miRNA:   3'- -CGCgCGCU---UGCUC-----CCUGAGUU---CAGUG- -5'
26400 5' -54.3 NC_005345.2 + 13777 0.68 0.644835
Target:  5'- aGCGCGcCGAACGcGGG-CUUGAGgaCGCu -3'
miRNA:   3'- -CGCGC-GCUUGCuCCCuGAGUUCa-GUG- -5'
26400 5' -54.3 NC_005345.2 + 15379 0.68 0.610349
Target:  5'- cUGCGCGAGCGuccgcAGGGAgUCGuugaccuGGUCGa -3'
miRNA:   3'- cGCGCGCUUGC-----UCCCUgAGU-------UCAGUg -5'
26400 5' -54.3 NC_005345.2 + 16422 0.67 0.689117
Target:  5'- aGCGgGCccacgcCGAGGGACUCGgcuGGuUCGCc -3'
miRNA:   3'- -CGCgCGcuu---GCUCCCUGAGU---UC-AGUG- -5'
26400 5' -54.3 NC_005345.2 + 19360 0.73 0.349827
Target:  5'- aGCGCGUagucgucuuCGAGGGACUCGgcGGUCGu -3'
miRNA:   3'- -CGCGCGcuu------GCUCCCUGAGU--UCAGUg -5'
26400 5' -54.3 NC_005345.2 + 21387 0.66 0.721778
Target:  5'- gGUGCGCGggUGAcGGGGCa-GAGU-GCg -3'
miRNA:   3'- -CGCGCGCuuGCU-CCCUGagUUCAgUG- -5'
26400 5' -54.3 NC_005345.2 + 21855 0.67 0.65595
Target:  5'- uGCGUGCGGGCGAGcug--CAGGUCGg -3'
miRNA:   3'- -CGCGCGCUUGCUCccugaGUUCAGUg -5'
26400 5' -54.3 NC_005345.2 + 22795 0.69 0.556319
Target:  5'- cCGCGCGAuccucgGCGGGGGGCg--GGUCu- -3'
miRNA:   3'- cGCGCGCU------UGCUCCCUGaguUCAGug -5'
26400 5' -54.3 NC_005345.2 + 23104 0.7 0.481884
Target:  5'- gGCGCucgccgagGCGAGCGAGGcGGCgagUCGGGUCu- -3'
miRNA:   3'- -CGCG--------CGCUUGCUCC-CUG---AGUUCAGug -5'
26400 5' -54.3 NC_005345.2 + 23298 0.67 0.710966
Target:  5'- gGCGC-CGAAgccCGAGGGGCggAAGgCGCg -3'
miRNA:   3'- -CGCGcGCUU---GCUCCCUGagUUCaGUG- -5'
26400 5' -54.3 NC_005345.2 + 23698 0.7 0.502704
Target:  5'- aGCGCacGCGAGCGGuacGGGGCUCugcgcUCGCu -3'
miRNA:   3'- -CGCG--CGCUUGCU---CCCUGAGuuc--AGUG- -5'
26400 5' -54.3 NC_005345.2 + 24429 0.7 0.513261
Target:  5'- aCGC-CGGGCGAGGG-UUCG-GUCGCg -3'
miRNA:   3'- cGCGcGCUUGCUCCCuGAGUuCAGUG- -5'
26400 5' -54.3 NC_005345.2 + 26557 0.68 0.604797
Target:  5'- gGUGCGCGAgcACaucgcgucguucaguGAGGGGCUCGAaUCGg -3'
miRNA:   3'- -CGCGCGCU--UG---------------CUCCCUGAGUUcAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.