miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26413 5' -57.1 NC_005345.2 + 22298 0.72 0.308537
Target:  5'- gGCGACGUGGGUcgaggugucGCGGUCcGGuUCGGg -3'
miRNA:   3'- aUGCUGCGCUCG---------CGCCAGcUCuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 33004 0.71 0.316111
Target:  5'- gGgGugGCGGGgGC-GUCGAcGAUCGGg -3'
miRNA:   3'- aUgCugCGCUCgCGcCAGCU-CUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 33357 0.71 0.331675
Target:  5'- aGCGGCGCGAGaGgGGUgGGGG-CGGu -3'
miRNA:   3'- aUGCUGCGCUCgCgCCAgCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 10612 0.71 0.339667
Target:  5'- aGCGGCGCG-GC-CGGUCGgcccGGGUCGa -3'
miRNA:   3'- aUGCUGCGCuCGcGCCAGC----UCUAGCc -5'
26413 5' -57.1 NC_005345.2 + 23112 0.71 0.356064
Target:  5'- -cCGAgGCGAGCgagGCGG-CGAG-UCGGg -3'
miRNA:   3'- auGCUgCGCUCG---CGCCaGCUCuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 30369 0.7 0.364469
Target:  5'- gACGGCagcccgcgGCGGGCGCaGGUCGAGG-CGu -3'
miRNA:   3'- aUGCUG--------CGCUCGCG-CCAGCUCUaGCc -5'
26413 5' -57.1 NC_005345.2 + 30131 0.7 0.364469
Target:  5'- aGCGGCcCGAGgGCGGcgcgccacccgUCGAGGUCGu -3'
miRNA:   3'- aUGCUGcGCUCgCGCC-----------AGCUCUAGCc -5'
26413 5' -57.1 NC_005345.2 + 9158 0.7 0.380813
Target:  5'- gACGGCGCGGGUGCacgggccGGUCGugugcgagcuGAUCGa -3'
miRNA:   3'- aUGCUGCGCUCGCG-------CCAGCu---------CUAGCc -5'
26413 5' -57.1 NC_005345.2 + 31225 0.7 0.381687
Target:  5'- gUGCGGC-CGGGUguacgGCGGgucCGGGGUCGGg -3'
miRNA:   3'- -AUGCUGcGCUCG-----CGCCa--GCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 27339 0.7 0.390497
Target:  5'- cGCGugGCgGGGCGCGGUacuucCGccGUCGGc -3'
miRNA:   3'- aUGCugCG-CUCGCGCCA-----GCucUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 48228 0.7 0.390497
Target:  5'- gACGACGUGAcGC-CGGUCGAucugCGGg -3'
miRNA:   3'- aUGCUGCGCU-CGcGCCAGCUcua-GCC- -5'
26413 5' -57.1 NC_005345.2 + 10397 0.7 0.399439
Target:  5'- cACGGCGUGAGC-CGGgCGAGgGUCGc -3'
miRNA:   3'- aUGCUGCGCUCGcGCCaGCUC-UAGCc -5'
26413 5' -57.1 NC_005345.2 + 3728 0.69 0.446046
Target:  5'- cUGCGACGuCGAcGaCGCGGUCGaAGAacUCGc -3'
miRNA:   3'- -AUGCUGC-GCU-C-GCGCCAGC-UCU--AGCc -5'
26413 5' -57.1 NC_005345.2 + 35290 0.69 0.455727
Target:  5'- aGCGAgcuguacuugucCGCGAGCGUGGggaccCGGGuugCGGg -3'
miRNA:   3'- aUGCU------------GCGCUCGCGCCa----GCUCua-GCC- -5'
26413 5' -57.1 NC_005345.2 + 31030 0.69 0.455727
Target:  5'- gACGGCgccgGCGAGUGCGG-CGAcGAUCu- -3'
miRNA:   3'- aUGCUG----CGCUCGCGCCaGCU-CUAGcc -5'
26413 5' -57.1 NC_005345.2 + 28335 0.69 0.455727
Target:  5'- gACGACGaCGAGCGCGacacgCGccGUCGGc -3'
miRNA:   3'- aUGCUGC-GCUCGCGCca---GCucUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 9329 0.69 0.465521
Target:  5'- cGCGAUGcCGAGgGUGGUCGGcauguccacgguGAUCaGGg -3'
miRNA:   3'- aUGCUGC-GCUCgCGCCAGCU------------CUAG-CC- -5'
26413 5' -57.1 NC_005345.2 + 14817 0.69 0.465521
Target:  5'- gGCgGGCGCGGGUGUGGUCGAcgcccGAgcagcuugcCGGg -3'
miRNA:   3'- aUG-CUGCGCUCGCGCCAGCU-----CUa--------GCC- -5'
26413 5' -57.1 NC_005345.2 + 31429 0.69 0.465521
Target:  5'- gGCGAUGagcccgaggaUGAGCGCGGgugCGAGGcgcCGGg -3'
miRNA:   3'- aUGCUGC----------GCUCGCGCCa--GCUCUa--GCC- -5'
26413 5' -57.1 NC_005345.2 + 34613 0.69 0.465521
Target:  5'- gGCGAggagccaGCGuGCgGCGGUCGGGG-CGGu -3'
miRNA:   3'- aUGCUg------CGCuCG-CGCCAGCUCUaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.