miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26415 3' -64.9 NC_005345.2 + 47946 0.73 0.074662
Target:  5'- gCGGCGUggccCGCGGGC-CGgacuGCCGaGCCGCc -3'
miRNA:   3'- aGCCGUA----GCGCCCGaGC----CGGC-CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 5269 0.73 0.074662
Target:  5'- gCGGCAggGCGGGCUCgggGGUCGGguaCUGCg -3'
miRNA:   3'- aGCCGUagCGCCCGAG---CCGGCC---GGCG- -5'
26415 3' -64.9 NC_005345.2 + 37655 0.73 0.07671
Target:  5'- cCGGCGUCgguGCGGGCcgccugcgCGGCCcugaugucgucGGCCGUg -3'
miRNA:   3'- aGCCGUAG---CGCCCGa-------GCCGG-----------CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 755 0.73 0.083184
Target:  5'- gCGGUGcUCGUGGGauagcccCGGCCGGCgGCg -3'
miRNA:   3'- aGCCGU-AGCGCCCga-----GCCGGCCGgCG- -5'
26415 3' -64.9 NC_005345.2 + 43475 0.73 0.085455
Target:  5'- gCGGCGcagCGCGgucGGCUCGGuCCGGgcCCGCc -3'
miRNA:   3'- aGCCGUa--GCGC---CCGAGCC-GGCC--GGCG- -5'
26415 3' -64.9 NC_005345.2 + 16927 0.73 0.087786
Target:  5'- gCGGC-UCaUGaGGUaCGGCCGGCCGCu -3'
miRNA:   3'- aGCCGuAGcGC-CCGaGCCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 45062 0.72 0.090176
Target:  5'- -gGGCAUCGUGGGCcgacUGGCuCGG-CGCa -3'
miRNA:   3'- agCCGUAGCGCCCGa---GCCG-GCCgGCG- -5'
26415 3' -64.9 NC_005345.2 + 45559 0.72 0.090176
Target:  5'- gCGGCcgagGUCgggGCGGGCcgguugCGGCCgggGGCCGCg -3'
miRNA:   3'- aGCCG----UAG---CGCCCGa-----GCCGG---CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 9146 0.72 0.092133
Target:  5'- gUCGGCcggguugacggCGCGGGUgcacgGGCCGGUCGUg -3'
miRNA:   3'- -AGCCGua---------GCGCCCGag---CCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 16353 0.72 0.095145
Target:  5'- gCGGCAUCGC-GGC-CGGC--GCCGCg -3'
miRNA:   3'- aGCCGUAGCGcCCGaGCCGgcCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 32184 0.72 0.096169
Target:  5'- aCGGCAgccggccgaggugcCGCaGGCgucucgucgagCGGCCGGCCGUa -3'
miRNA:   3'- aGCCGUa-------------GCGcCCGa----------GCCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 34977 0.72 0.100371
Target:  5'- -gGGguUCGaCGGGCUCauGGUCGGuCUGCg -3'
miRNA:   3'- agCCguAGC-GCCCGAG--CCGGCC-GGCG- -5'
26415 3' -64.9 NC_005345.2 + 29063 0.72 0.100371
Target:  5'- gCGGCG--GCGGGCUC-GCCGaGaCCGCg -3'
miRNA:   3'- aGCCGUagCGCCCGAGcCGGC-C-GGCG- -5'
26415 3' -64.9 NC_005345.2 + 42414 0.72 0.103085
Target:  5'- aCGGCGaugcgggaCGUGGGCUUGcacaccgugcccGCCGGCUGCu -3'
miRNA:   3'- aGCCGUa-------GCGCCCGAGC------------CGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 3420 0.72 0.103085
Target:  5'- -aGGCG--GCGGGCgcggCGGCgGGCgGCg -3'
miRNA:   3'- agCCGUagCGCCCGa---GCCGgCCGgCG- -5'
26415 3' -64.9 NC_005345.2 + 4272 0.72 0.103085
Target:  5'- cCGGCggUGCGGGCagcUCgGGCUcgGGCUGCg -3'
miRNA:   3'- aGCCGuaGCGCCCG---AG-CCGG--CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 8372 0.72 0.103085
Target:  5'- gUCGGCGagGUGuGGaaccgCGGCCGGCgGCc -3'
miRNA:   3'- -AGCCGUagCGC-CCga---GCCGGCCGgCG- -5'
26415 3' -64.9 NC_005345.2 + 42761 0.72 0.103085
Target:  5'- cCGGCgGUUGcCGGGCUUGGaacuCGGCCGa -3'
miRNA:   3'- aGCCG-UAGC-GCCCGAGCCg---GCCGGCg -5'
26415 3' -64.9 NC_005345.2 + 34751 0.71 0.105868
Target:  5'- gUCGGCGaCGUGcagccggaucGGCacCGGCCGGUCGCc -3'
miRNA:   3'- -AGCCGUaGCGC----------CCGa-GCCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 5206 0.71 0.105868
Target:  5'- cCGGCA-CGgcCGGGCagcucgCGGCCGGCCu- -3'
miRNA:   3'- aGCCGUaGC--GCCCGa-----GCCGGCCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.