miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26415 3' -64.9 NC_005345.2 + 39833 1.11 0.000085
Target:  5'- cUCGGCAUCGCGGGCUCGGCCGGCCGCa -3'
miRNA:   3'- -AGCCGUAGCGCCCGAGCCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 29382 0.79 0.027761
Target:  5'- cUCGGUGUCGUacGGCUCGGCCG-CCGCc -3'
miRNA:   3'- -AGCCGUAGCGc-CCGAGCCGGCcGGCG- -5'
26415 3' -64.9 NC_005345.2 + 41875 0.78 0.031019
Target:  5'- cUCGGCGaucgCGCGGGCggcgacgcuugUCGGuUCGGCCGCc -3'
miRNA:   3'- -AGCCGUa---GCGCCCG-----------AGCC-GGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 2025 0.78 0.031019
Target:  5'- cUCGGCGUCcucgucgaGCGGGCccggcgCGGCCcggcgGGCCGCg -3'
miRNA:   3'- -AGCCGUAG--------CGCCCGa-----GCCGG-----CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 19400 0.78 0.031891
Target:  5'- gCaGCGUCGCGccgaGCUCGGUCGGCUGCg -3'
miRNA:   3'- aGcCGUAGCGCc---CGAGCCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 40764 0.78 0.032787
Target:  5'- gCGGC-UCGuCGGGC-CGGUCGGCCGg -3'
miRNA:   3'- aGCCGuAGC-GCCCGaGCCGGCCGGCg -5'
26415 3' -64.9 NC_005345.2 + 6000 0.77 0.039787
Target:  5'- uUC-GCGUUGCGGGUgcaguucucCGGCCGGCCGUu -3'
miRNA:   3'- -AGcCGUAGCGCCCGa--------GCCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 43912 0.77 0.042043
Target:  5'- gCGGCGcgcagCGCGucGGCgaucaGGCCGGCCGCg -3'
miRNA:   3'- aGCCGUa----GCGC--CCGag---CCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 27110 0.76 0.045664
Target:  5'- gUCGGC-UCGUGaGCUCGGCCGGgaCCGUc -3'
miRNA:   3'- -AGCCGuAGCGCcCGAGCCGGCC--GGCG- -5'
26415 3' -64.9 NC_005345.2 + 1147 0.75 0.05384
Target:  5'- gUUGGCgGUCGUGacuGCUCGGuCCGGCUGCg -3'
miRNA:   3'- -AGCCG-UAGCGCc--CGAGCC-GGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 14675 0.75 0.055183
Target:  5'- gCGGCGUCGCcgaugccGGGC-CGGCCGuGcCCGUg -3'
miRNA:   3'- aGCCGUAGCG-------CCCGaGCCGGC-C-GGCG- -5'
26415 3' -64.9 NC_005345.2 + 33014 0.75 0.058445
Target:  5'- -gGGCGUCGacgauCGGGCUCGGCCgcgGGgUGCg -3'
miRNA:   3'- agCCGUAGC-----GCCCGAGCCGG---CCgGCG- -5'
26415 3' -64.9 NC_005345.2 + 37563 0.75 0.058445
Target:  5'- cUCGGCccGagGCGGGCgcaGGCgGGCUGCa -3'
miRNA:   3'- -AGCCG--UagCGCCCGag-CCGgCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 17487 0.75 0.061725
Target:  5'- cUCGGCGUCgggaaggaacuGCGGGC-C-GCCGGUCGCc -3'
miRNA:   3'- -AGCCGUAG-----------CGCCCGaGcCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 43937 0.74 0.065182
Target:  5'- aCGGCGUguagCGcCGGGC-CGGCCGuGCCGa -3'
miRNA:   3'- aGCCGUA----GC-GCCCGaGCCGGC-CGGCg -5'
26415 3' -64.9 NC_005345.2 + 18529 0.74 0.06698
Target:  5'- gUCGGCGUC-CGGGgcggucugaUCGGgCGGCUGCa -3'
miRNA:   3'- -AGCCGUAGcGCCCg--------AGCCgGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 15043 0.74 0.070721
Target:  5'- gUCGGCggcgaugucgccGUCGCGGGC---GCCGGCCuGCa -3'
miRNA:   3'- -AGCCG------------UAGCGCCCGagcCGGCCGG-CG- -5'
26415 3' -64.9 NC_005345.2 + 8536 0.74 0.071492
Target:  5'- gCGGC-UCGCGGagagguacaccccguGCUC-GCCGGCUGCg -3'
miRNA:   3'- aGCCGuAGCGCC---------------CGAGcCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 35947 0.74 0.072665
Target:  5'- gCGGCGUCGUcaugagcgGGGUugacuuccugUCGGaccCCGGCCGCa -3'
miRNA:   3'- aGCCGUAGCG--------CCCG----------AGCC---GGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 14910 0.74 0.072665
Target:  5'- -gGGCGaaGCGGGCcgCGGCgCGGCgGCu -3'
miRNA:   3'- agCCGUagCGCCCGa-GCCG-GCCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.