miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26415 3' -64.9 NC_005345.2 + 39833 1.11 0.000085
Target:  5'- cUCGGCAUCGCGGGCUCGGCCGGCCGCa -3'
miRNA:   3'- -AGCCGUAGCGCCCGAGCCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 38577 0.71 0.107858
Target:  5'- aCGGCGUaCGUGGcGCUcgCGGCCGGgauuaccucggccaCCGCc -3'
miRNA:   3'- aGCCGUA-GCGCC-CGA--GCCGGCC--------------GGCG- -5'
26415 3' -64.9 NC_005345.2 + 23660 0.71 0.108721
Target:  5'- aCGGCGcCGaccaGGGUcgCGGCCGGUCGg -3'
miRNA:   3'- aGCCGUaGCg---CCCGa-GCCGGCCGGCg -5'
26415 3' -64.9 NC_005345.2 + 585 0.66 0.278406
Target:  5'- aUCGGgGugaUCGUGGGa---GUCGGCCGCc -3'
miRNA:   3'- -AGCCgU---AGCGCCCgagcCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 14675 0.75 0.055183
Target:  5'- gCGGCGUCGCcgaugccGGGC-CGGCCGuGcCCGUg -3'
miRNA:   3'- aGCCGUAGCG-------CCCGaGCCGGC-C-GGCG- -5'
26415 3' -64.9 NC_005345.2 + 37563 0.75 0.058445
Target:  5'- cUCGGCccGagGCGGGCgcaGGCgGGCUGCa -3'
miRNA:   3'- -AGCCG--UagCGCCCGag-CCGgCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 35947 0.74 0.072665
Target:  5'- gCGGCGUCGUcaugagcgGGGUugacuuccugUCGGaccCCGGCCGCa -3'
miRNA:   3'- aGCCGUAGCG--------CCCG----------AGCC---GGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 14910 0.74 0.072665
Target:  5'- -gGGCGaaGCGGGCcgCGGCgCGGCgGCu -3'
miRNA:   3'- agCCGUagCGCCCGa-GCCG-GCCGgCG- -5'
26415 3' -64.9 NC_005345.2 + 45062 0.72 0.090176
Target:  5'- -gGGCAUCGUGGGCcgacUGGCuCGG-CGCa -3'
miRNA:   3'- agCCGUAGCGCCCGa---GCCG-GCCgGCG- -5'
26415 3' -64.9 NC_005345.2 + 5206 0.71 0.105868
Target:  5'- cCGGCA-CGgcCGGGCagcucgCGGCCGGCCu- -3'
miRNA:   3'- aGCCGUaGC--GCCCGa-----GCCGGCCGGcg -5'
26415 3' -64.9 NC_005345.2 + 16353 0.72 0.095145
Target:  5'- gCGGCAUCGC-GGC-CGGC--GCCGCg -3'
miRNA:   3'- aGCCGUAGCGcCCGaGCCGgcCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 16927 0.73 0.087786
Target:  5'- gCGGC-UCaUGaGGUaCGGCCGGCCGCu -3'
miRNA:   3'- aGCCGuAGcGC-CCGaGCCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 2025 0.78 0.031019
Target:  5'- cUCGGCGUCcucgucgaGCGGGCccggcgCGGCCcggcgGGCCGCg -3'
miRNA:   3'- -AGCCGUAG--------CGCCCGa-----GCCGG-----CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 34977 0.72 0.100371
Target:  5'- -gGGguUCGaCGGGCUCauGGUCGGuCUGCg -3'
miRNA:   3'- agCCguAGC-GCCCGAG--CCGGCC-GGCG- -5'
26415 3' -64.9 NC_005345.2 + 41875 0.78 0.031019
Target:  5'- cUCGGCGaucgCGCGGGCggcgacgcuugUCGGuUCGGCCGCc -3'
miRNA:   3'- -AGCCGUa---GCGCCCG-----------AGCC-GGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 47946 0.73 0.074662
Target:  5'- gCGGCGUggccCGCGGGC-CGgacuGCCGaGCCGCc -3'
miRNA:   3'- aGCCGUA----GCGCCCGaGC----CGGC-CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 29063 0.72 0.100371
Target:  5'- gCGGCG--GCGGGCUC-GCCGaGaCCGCg -3'
miRNA:   3'- aGCCGUagCGCCCGAGcCGGC-C-GGCG- -5'
26415 3' -64.9 NC_005345.2 + 15376 0.71 0.108721
Target:  5'- aCGGCAgCGCGGGgguaCUUGGCCcGGgUGCu -3'
miRNA:   3'- aGCCGUaGCGCCC----GAGCCGG-CCgGCG- -5'
26415 3' -64.9 NC_005345.2 + 1147 0.75 0.05384
Target:  5'- gUUGGCgGUCGUGacuGCUCGGuCCGGCUGCg -3'
miRNA:   3'- -AGCCG-UAGCGCc--CGAGCC-GGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 43937 0.74 0.065182
Target:  5'- aCGGCGUguagCGcCGGGC-CGGCCGuGCCGa -3'
miRNA:   3'- aGCCGUA----GC-GCCCGaGCCGGC-CGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.