miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26415 3' -64.9 NC_005345.2 + 585 0.66 0.278406
Target:  5'- aUCGGgGugaUCGUGGGa---GUCGGCCGCc -3'
miRNA:   3'- -AGCCgU---AGCGCCCgagcCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 629 0.67 0.207626
Target:  5'- gCGG-AUCGCGucCUCGGCCuGCgGCg -3'
miRNA:   3'- aGCCgUAGCGCccGAGCCGGcCGgCG- -5'
26415 3' -64.9 NC_005345.2 + 755 0.73 0.083184
Target:  5'- gCGGUGcUCGUGGGauagcccCGGCCGGCgGCg -3'
miRNA:   3'- aGCCGU-AGCGCCCga-----GCCGGCCGgCG- -5'
26415 3' -64.9 NC_005345.2 + 941 0.67 0.229312
Target:  5'- gUCGGCcgC-CGGGUUgaaCGggauacGCCGGCCGUc -3'
miRNA:   3'- -AGCCGuaGcGCCCGA---GC------CGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 1147 0.75 0.05384
Target:  5'- gUUGGCgGUCGUGacuGCUCGGuCCGGCUGCg -3'
miRNA:   3'- -AGCCG-UAGCGCc--CGAGCC-GGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 1180 0.69 0.156947
Target:  5'- gCGGCGcacaCGgGcGGCUCGGCagucCGGcCCGCg -3'
miRNA:   3'- aGCCGUa---GCgC-CCGAGCCG----GCC-GGCG- -5'
26415 3' -64.9 NC_005345.2 + 2025 0.78 0.031019
Target:  5'- cUCGGCGUCcucgucgaGCGGGCccggcgCGGCCcggcgGGCCGCg -3'
miRNA:   3'- -AGCCGUAG--------CGCCCGa-----GCCGG-----CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 2340 0.71 0.117719
Target:  5'- cUCGGCGUCcgaGCGuGCUUGGCggcgcagccCGGUCGCg -3'
miRNA:   3'- -AGCCGUAG---CGCcCGAGCCG---------GCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 2676 0.68 0.192545
Target:  5'- aUCGGCGaggcCGCGGGCguugUCGauguggguGUCGGCgGCg -3'
miRNA:   3'- -AGCCGUa---GCGCCCG----AGC--------CGGCCGgCG- -5'
26415 3' -64.9 NC_005345.2 + 3330 0.69 0.152941
Target:  5'- gUGGCGUCacuCGGGCUgCGGgCG-CCGCg -3'
miRNA:   3'- aGCCGUAGc--GCCCGA-GCCgGCcGGCG- -5'
26415 3' -64.9 NC_005345.2 + 3420 0.72 0.103085
Target:  5'- -aGGCG--GCGGGCgcggCGGCgGGCgGCg -3'
miRNA:   3'- agCCGUagCGCCCGa---GCCGgCCGgCG- -5'
26415 3' -64.9 NC_005345.2 + 3585 0.67 0.243222
Target:  5'- gUCGcGCAccUGCGGGUcgUCGGCCcacaggugaccccacGGcCCGCg -3'
miRNA:   3'- -AGC-CGUa-GCGCCCG--AGCCGG---------------CC-GGCG- -5'
26415 3' -64.9 NC_005345.2 + 3927 0.71 0.117719
Target:  5'- gUCGGUGUCGuCGaGGUgcucgccgCGGCCGGCaGCc -3'
miRNA:   3'- -AGCCGUAGC-GC-CCGa-------GCCGGCCGgCG- -5'
26415 3' -64.9 NC_005345.2 + 4173 0.67 0.235025
Target:  5'- gCGGCAggCGCucacGGGg-CGGCaGGCCGUg -3'
miRNA:   3'- aGCCGUa-GCG----CCCgaGCCGgCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 4272 0.72 0.103085
Target:  5'- cCGGCggUGCGGGCagcUCgGGCUcgGGCUGCg -3'
miRNA:   3'- aGCCGuaGCGCCCG---AG-CCGG--CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 4349 0.69 0.156947
Target:  5'- cCGGgGUCcugccuCGGGCg-GGCgGGCCGCu -3'
miRNA:   3'- aGCCgUAGc-----GCCCGagCCGgCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 4458 0.68 0.178432
Target:  5'- -aGGCuccggCGgGGGCcCGG-CGGCCGUg -3'
miRNA:   3'- agCCGua---GCgCCCGaGCCgGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 5181 0.69 0.156542
Target:  5'- -gGGCGagcCGcCGGGCUgcacgcaucggcaCGGCCGGCCcgGCg -3'
miRNA:   3'- agCCGUa--GC-GCCCGA-------------GCCGGCCGG--CG- -5'
26415 3' -64.9 NC_005345.2 + 5206 0.71 0.105868
Target:  5'- cCGGCA-CGgcCGGGCagcucgCGGCCGGCCu- -3'
miRNA:   3'- aGCCGUaGC--GCCCGa-----GCCGGCCGGcg -5'
26415 3' -64.9 NC_005345.2 + 5269 0.73 0.074662
Target:  5'- gCGGCAggGCGGGCUCgggGGUCGGguaCUGCg -3'
miRNA:   3'- aGCCGUagCGCCCGAG---CCGGCC---GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.