miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26415 3' -64.9 NC_005345.2 + 10763 0.66 0.281068
Target:  5'- -aGGUAUUGCcucccGGgaguugcugccgcuuGCUCGGCCGuCCGCa -3'
miRNA:   3'- agCCGUAGCG-----CC---------------CGAGCCGGCcGGCG- -5'
26415 3' -64.9 NC_005345.2 + 45368 0.66 0.252881
Target:  5'- cCGuGCggCGCGGGUccgcguucaccUCGGCCGuCCaGCg -3'
miRNA:   3'- aGC-CGuaGCGCCCG-----------AGCCGGCcGG-CG- -5'
26415 3' -64.9 NC_005345.2 + 28758 0.66 0.252881
Target:  5'- aCGGCGggGCcGGCUCGGUgaCGGUCa- -3'
miRNA:   3'- aGCCGUagCGcCCGAGCCG--GCCGGcg -5'
26415 3' -64.9 NC_005345.2 + 13822 0.66 0.252268
Target:  5'- cCGGCcgCGCcgaucgcccGGaaGCUCGGCgcgaggaCGGCCGUc -3'
miRNA:   3'- aGCCGuaGCG---------CC--CGAGCCG-------GCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 18815 0.66 0.246808
Target:  5'- aCGGCggCGCGGGCcugguaguccUCGaCCGuugcguacGCCGCc -3'
miRNA:   3'- aGCCGuaGCGCCCG----------AGCcGGC--------CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 37439 0.66 0.246808
Target:  5'- gCGGCG--GCGGcccGCU-GGUCGGCCGUc -3'
miRNA:   3'- aGCCGUagCGCC---CGAgCCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 10601 0.66 0.252881
Target:  5'- gUGGCA-CGagcaGcGGCgCGGCCGGUCGg -3'
miRNA:   3'- aGCCGUaGCg---C-CCGaGCCGGCCGGCg -5'
26415 3' -64.9 NC_005345.2 + 12594 0.66 0.252881
Target:  5'- gCGGCcgcgAUCGuCGGcuacgcGCUCGGCCGGgCa- -3'
miRNA:   3'- aGCCG----UAGC-GCC------CGAGCCGGCCgGcg -5'
26415 3' -64.9 NC_005345.2 + 34334 0.66 0.252881
Target:  5'- uUCGGCA-CGCaGGCcgaagaccUCGGC--GCCGCa -3'
miRNA:   3'- -AGCCGUaGCGcCCG--------AGCCGgcCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 24148 0.66 0.255344
Target:  5'- cUCGGCGaccgcggcgagcaccUCGacgaCGGGCacuugccacUCGaCCGGCCGCc -3'
miRNA:   3'- -AGCCGU---------------AGC----GCCCG---------AGCcGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 11268 0.66 0.258451
Target:  5'- -gGGCAcCGCcgcgaccguccGGGCcugagccUC-GCCGGCCGCg -3'
miRNA:   3'- agCCGUaGCG-----------CCCG-------AGcCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 7499 0.66 0.265395
Target:  5'- gUGGCGggccgccauUCgGUGGGCgugCuGCCGGCgGCg -3'
miRNA:   3'- aGCCGU---------AG-CGCCCGa--GcCGGCCGgCG- -5'
26415 3' -64.9 NC_005345.2 + 37923 0.66 0.27907
Target:  5'- gCGGCAgCGCGGGCagucaugcccaugccCGuGCCacaGGCCGg -3'
miRNA:   3'- aGCCGUaGCGCCCGa--------------GC-CGG---CCGGCg -5'
26415 3' -64.9 NC_005345.2 + 31940 0.66 0.278406
Target:  5'- cUCGGCGggUGCGGGUgCGGgugCGGgUGCg -3'
miRNA:   3'- -AGCCGUa-GCGCCCGaGCCg--GCCgGCG- -5'
26415 3' -64.9 NC_005345.2 + 45469 0.66 0.277082
Target:  5'- aCGGCGgccgggGUGGGCaugUCGGCgaagguggugggGGCCGCg -3'
miRNA:   3'- aGCCGUag----CGCCCG---AGCCGg-----------CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 34999 0.66 0.271838
Target:  5'- cUCGGCGcCGgGGcGCUgCGGC-GGCCa- -3'
miRNA:   3'- -AGCCGUaGCgCC-CGA-GCCGgCCGGcg -5'
26415 3' -64.9 NC_005345.2 + 42925 0.66 0.269246
Target:  5'- -gGGCGUCGUGGuGCagguaucgggaggUGGCCagggcGCCGCg -3'
miRNA:   3'- agCCGUAGCGCC-CGa------------GCCGGc----CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 32908 0.66 0.267957
Target:  5'- -gGGCGcUGCGGGC-CGGUCGaucagggguagcgcaGCUGCu -3'
miRNA:   3'- agCCGUaGCGCCCGaGCCGGC---------------CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 20287 0.66 0.265395
Target:  5'- cCGG-AUCGUGccGGCgacgUCGGucuuaCCGGCCGCg -3'
miRNA:   3'- aGCCgUAGCGC--CCG----AGCC-----GGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 32949 0.66 0.265395
Target:  5'- gUCGag--CGCGaGGCggacGCCGGCCGCg -3'
miRNA:   3'- -AGCcguaGCGC-CCGagc-CGGCCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.