miRNA display CGI


Results 21 - 40 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26417 5' -58.1 NC_005345.2 + 31008 0.73 0.222094
Target:  5'- aCCCGAcGCcgGGGAUcGgGaCGACgGCGCCg -3'
miRNA:   3'- -GGGCUuUG--CCCUA-CgC-GCUGgCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 13618 0.73 0.227827
Target:  5'- gCCCGAGccccGCGaGGAaccggacgGCGCGGCgugaGCGCCg -3'
miRNA:   3'- -GGGCUU----UGC-CCUa-------CGCGCUGg---CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 14508 0.73 0.227827
Target:  5'- gCCGAGAcCGGGAgcaGCGC-ACCGCcCCg -3'
miRNA:   3'- gGGCUUU-GCCCUa--CGCGcUGGCGcGG- -5'
26417 5' -58.1 NC_005345.2 + 39667 0.73 0.227827
Target:  5'- gCUCGAcuCGGGcgGCGUGAucuuccugcaguUCGCGCCc -3'
miRNA:   3'- -GGGCUuuGCCCuaCGCGCU------------GGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 30455 0.73 0.227827
Target:  5'- cCCCGAucCGGGcacgcugcGCGCGAuCUGCGUCg -3'
miRNA:   3'- -GGGCUuuGCCCua------CGCGCU-GGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 8411 0.73 0.233686
Target:  5'- gCCGGucGACGGG--GCGCGGCUGgaCGCCg -3'
miRNA:   3'- gGGCU--UUGCCCuaCGCGCUGGC--GCGG- -5'
26417 5' -58.1 NC_005345.2 + 9728 0.73 0.23967
Target:  5'- -nCGc-GCGGGc--CGCGACCGCGCCg -3'
miRNA:   3'- ggGCuuUGCCCuacGCGCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 29299 0.73 0.23967
Target:  5'- gCCCGAGGCaGcGcgcucGUGaaCGCGACCGUGCCg -3'
miRNA:   3'- -GGGCUUUGcC-C-----UAC--GCGCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 14935 0.73 0.23967
Target:  5'- gCUGcAGCGGGcgGCgGCGAaggaUCGCGCCg -3'
miRNA:   3'- gGGCuUUGCCCuaCG-CGCU----GGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 8035 0.73 0.245782
Target:  5'- cCCCGuaccGCGGGcGUGCuGCGGcCCGCGUa -3'
miRNA:   3'- -GGGCuu--UGCCC-UACG-CGCU-GGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 19261 0.73 0.245782
Target:  5'- --aGGAcCGGGAUGCcgacgGCGGCCGCGUg -3'
miRNA:   3'- gggCUUuGCCCUACG-----CGCUGGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 31478 0.72 0.252023
Target:  5'- -gUGAGGCGGGcgaGCGCGGCguagGCGCCg -3'
miRNA:   3'- ggGCUUUGCCCua-CGCGCUGg---CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 44859 0.72 0.252023
Target:  5'- cUCCGAGGCGccccGCgGCGGCCGCGUCg -3'
miRNA:   3'- -GGGCUUUGCccuaCG-CGCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 22508 0.72 0.252023
Target:  5'- cCCCGAcACGGGucGCcCGGCCggGCGCCc -3'
miRNA:   3'- -GGGCUuUGCCCuaCGcGCUGG--CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 5504 0.72 0.25775
Target:  5'- aCCG-AGCGGGGUcGCuacuaccGCGACCcCGCCg -3'
miRNA:   3'- gGGCuUUGCCCUA-CG-------CGCUGGcGCGG- -5'
26417 5' -58.1 NC_005345.2 + 25136 0.72 0.258393
Target:  5'- -aCGccuCGGcGA-GCGCGAUCGCGCCg -3'
miRNA:   3'- ggGCuuuGCC-CUaCGCGCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 26022 0.72 0.258393
Target:  5'- aCCGGAcGCGGGA-GCGC-ACCgGCGCUc -3'
miRNA:   3'- gGGCUU-UGCCCUaCGCGcUGG-CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 18723 0.71 0.290105
Target:  5'- gCCCGGu-CGGGAUguggcgcgccaugaGCGCGGaCGCGUCg -3'
miRNA:   3'- -GGGCUuuGCCCUA--------------CGCGCUgGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 13782 0.71 0.292229
Target:  5'- gCCGAAcGCGGGcuugaggacgcuGUuccacauccacGCGcCGGCCGCGCCg -3'
miRNA:   3'- gGGCUU-UGCCC------------UA-----------CGC-GCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 34043 0.71 0.292229
Target:  5'- gUCCGGAucgACGGcGAgaucaGCGGCCGCGCg -3'
miRNA:   3'- -GGGCUU---UGCC-CUacg--CGCUGGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.