miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26417 5' -58.1 NC_005345.2 + 40688 0.97 0.004304
Target:  5'- cCCCGAAACGGGAguCGCGACCGCGCCc -3'
miRNA:   3'- -GGGCUUUGCCCUacGCGCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 35934 0.79 0.089351
Target:  5'- gCCGGGgcGCGGGGUGUGCucGCCGCGCg -3'
miRNA:   3'- gGGCUU--UGCCCUACGCGc-UGGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 9698 0.79 0.091859
Target:  5'- gCCGAucAGCGGGccgccGCGUGAgCCGCGCCg -3'
miRNA:   3'- gGGCU--UUGCCCua---CGCGCU-GGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 773 0.77 0.134694
Target:  5'- cCCCGGccggcGGCGGGGgaUGC-CGACCGgGCCc -3'
miRNA:   3'- -GGGCU-----UUGCCCU--ACGcGCUGGCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 39249 0.76 0.146011
Target:  5'- gCCCG-GACGGGAagcgcacguucgUGCGCGGC-GCGUCg -3'
miRNA:   3'- -GGGCuUUGCCCU------------ACGCGCUGgCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 39201 0.76 0.146011
Target:  5'- aCCCGGGccGCGGGuUG-GCGACCGUcggGCCg -3'
miRNA:   3'- -GGGCUU--UGCCCuACgCGCUGGCG---CGG- -5'
26417 5' -58.1 NC_005345.2 + 36481 0.76 0.149972
Target:  5'- aCCGAcccGGCGGGuacgccaacgGCGgcCGACCGCGCCc -3'
miRNA:   3'- gGGCU---UUGCCCua--------CGC--GCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 7525 0.76 0.15403
Target:  5'- aCCCGggGaucgagaucccCGaGGGUGCGaCGGCCGUGCa -3'
miRNA:   3'- -GGGCuuU-----------GC-CCUACGC-GCUGGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 24858 0.76 0.158188
Target:  5'- uCCCGcgGCGuGAcgGaCGCGACCGCGCUg -3'
miRNA:   3'- -GGGCuuUGCcCUa-C-GCGCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 26769 0.75 0.171276
Target:  5'- cCCCGgcGCGGG-UGCggcggaucGUGGCCGgCGCCg -3'
miRNA:   3'- -GGGCuuUGCCCuACG--------CGCUGGC-GCGG- -5'
26417 5' -58.1 NC_005345.2 + 31264 0.75 0.171276
Target:  5'- aCUCGGGugcgcggguGCGGGG-GCGgGugCGCGCCa -3'
miRNA:   3'- -GGGCUU---------UGCCCUaCGCgCugGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 18925 0.75 0.185323
Target:  5'- aCCGGcucaccGCcGGAUGCGCGAUCGuCGCCc -3'
miRNA:   3'- gGGCUu-----UGcCCUACGCGCUGGC-GCGG- -5'
26417 5' -58.1 NC_005345.2 + 23327 0.75 0.185323
Target:  5'- gCCGGAACaaGGAUGCGaucccgcaGACCGUGCUg -3'
miRNA:   3'- gGGCUUUGc-CCUACGCg-------CUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 317 0.74 0.195244
Target:  5'- cCCCGGAAgGGGcgGgGCGGCUcCGCUc -3'
miRNA:   3'- -GGGCUUUgCCCuaCgCGCUGGcGCGG- -5'
26417 5' -58.1 NC_005345.2 + 11614 0.74 0.195244
Target:  5'- gCCGcuGGCGGGAgUGgGCGgagagcgagcgcACCGCGCCg -3'
miRNA:   3'- gGGCu-UUGCCCU-ACgCGC------------UGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 15435 0.74 0.205096
Target:  5'- uCCCGAAGCGGGGucggcacggaguuUGUGCagcgucugccGGCUGaCGCCg -3'
miRNA:   3'- -GGGCUUUGCCCU-------------ACGCG----------CUGGC-GCGG- -5'
26417 5' -58.1 NC_005345.2 + 18552 0.74 0.210995
Target:  5'- gCUCGggGCGcucgccGGGUGCGCGcCCaGCGUCg -3'
miRNA:   3'- -GGGCuuUGC------CCUACGCGCuGG-CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 32301 0.74 0.210995
Target:  5'- cCUCGAAcuGCGGGAcgGCGCGGugaagaaGCGCCg -3'
miRNA:   3'- -GGGCUU--UGCCCUa-CGCGCUgg-----CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 21332 0.73 0.222094
Target:  5'- gCUCGGu-CGGGuccucgcccGUGCGCGGCuUGCGCCa -3'
miRNA:   3'- -GGGCUuuGCCC---------UACGCGCUG-GCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 31008 0.73 0.222094
Target:  5'- aCCCGAcGCcgGGGAUcGgGaCGACgGCGCCg -3'
miRNA:   3'- -GGGCUuUG--CCCUA-CgC-GCUGgCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.