miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26417 5' -58.1 NC_005345.2 + 317 0.74 0.195244
Target:  5'- cCCCGGAAgGGGcgGgGCGGCUcCGCUc -3'
miRNA:   3'- -GGGCUUUgCCCuaCgCGCUGGcGCGG- -5'
26417 5' -58.1 NC_005345.2 + 645 0.66 0.551625
Target:  5'- gCCUGcgGCGuGA-GCGgGACCGUGCg -3'
miRNA:   3'- -GGGCuuUGCcCUaCGCgCUGGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 773 0.77 0.134694
Target:  5'- cCCCGGccggcGGCGGGGgaUGC-CGACCGgGCCc -3'
miRNA:   3'- -GGGCU-----UUGCCCU--ACGcGCUGGCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 948 0.66 0.572618
Target:  5'- gCCGGguugAACGGGAUaCGcCGGCCGUccuugacggcgGCCc -3'
miRNA:   3'- gGGCU----UUGCCCUAcGC-GCUGGCG-----------CGG- -5'
26417 5' -58.1 NC_005345.2 + 1086 0.69 0.404855
Target:  5'- cCCCucGACGGcGAcgaGCG-GugCGCGCCg -3'
miRNA:   3'- -GGGcuUUGCC-CUa--CGCgCugGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 1138 0.67 0.520602
Target:  5'- cCCCGGAGCcuGGGA--CaCcACCGCGCCg -3'
miRNA:   3'- -GGGCUUUG--CCCUacGcGcUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 2033 0.7 0.337278
Target:  5'- cCUCGucGAGCGGGcccgGCGCGGCCcggcGgGCCg -3'
miRNA:   3'- -GGGC--UUUGCCCua--CGCGCUGG----CgCGG- -5'
26417 5' -58.1 NC_005345.2 + 2098 0.7 0.345261
Target:  5'- uCCCGGc-CGGGGUcaGCGUcgucgaGACgGCGCCg -3'
miRNA:   3'- -GGGCUuuGCCCUA--CGCG------CUGgCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 2179 0.66 0.576841
Target:  5'- aCCGugGCGGGugcaacgccgauggcGcGCGCGAUCGCGg- -3'
miRNA:   3'- gGGCuuUGCCC---------------UaCGCGCUGGCGCgg -5'
26417 5' -58.1 NC_005345.2 + 2286 0.7 0.337278
Target:  5'- aCCCcu-GCGGGucgGUcaGACCGCGCCg -3'
miRNA:   3'- -GGGcuuUGCCCua-CGcgCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 2731 0.68 0.441696
Target:  5'- gCCCGcc-CGGcGAUGacaGCGGCCcgcauguggagcGCGCCa -3'
miRNA:   3'- -GGGCuuuGCC-CUACg--CGCUGG------------CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 3043 0.66 0.604431
Target:  5'- cCCCGAca-GGGucgccGCGUGGauguCCGCGCa -3'
miRNA:   3'- -GGGCUuugCCCua---CGCGCU----GGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 3338 0.66 0.572618
Target:  5'- aCUCGGGcuGCGGGcgccGCGUucGAUCGCGCg -3'
miRNA:   3'- -GGGCUU--UGCCCua--CGCG--CUGGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 3763 0.68 0.48036
Target:  5'- cUCCGcuGGACGGccgaGGUGaaCGCGGacCCGCGCCg -3'
miRNA:   3'- -GGGC--UUUGCC----CUAC--GCGCU--GGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 3895 0.71 0.314143
Target:  5'- gCCGAcgcucgcaguGugGGGGUGCGCcguggcugacGACCGCaCCc -3'
miRNA:   3'- gGGCU----------UugCCCUACGCG----------CUGGCGcGG- -5'
26417 5' -58.1 NC_005345.2 + 4233 0.67 0.541216
Target:  5'- --gGggGCGGGGUGCucaCGGCuCGgGCUg -3'
miRNA:   3'- gggCuuUGCCCUACGc--GCUG-GCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 4252 0.68 0.48036
Target:  5'- -gCGGAGCGGGAcgagGCcacGUuGCUGCGCCu -3'
miRNA:   3'- ggGCUUUGCCCUa---CG---CGcUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 4343 0.68 0.48036
Target:  5'- gCCGAGcCGGGGUccugccucGgGCGGgCGgGCCg -3'
miRNA:   3'- gGGCUUuGCCCUA--------CgCGCUgGCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 4461 0.69 0.423035
Target:  5'- cUCCG--GCGGGG-GCccgGCGGCCGUGUCc -3'
miRNA:   3'- -GGGCuuUGCCCUaCG---CGCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 4549 0.66 0.551625
Target:  5'- aCCCGGacGACGGcagcGUGUaCGACUGCuGCCc -3'
miRNA:   3'- -GGGCU--UUGCCc---UACGcGCUGGCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.