miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26417 5' -58.1 NC_005345.2 + 25148 0.66 0.604431
Target:  5'- aUCGAAugGuGGAUGaccgGCGGCCGgaGCa -3'
miRNA:   3'- gGGCUUugC-CCUACg---CGCUGGCg-CGg -5'
26417 5' -58.1 NC_005345.2 + 37244 0.66 0.572618
Target:  5'- gCCGuaguAGCGGGcgacgGCgGCGGUCGCGUCg -3'
miRNA:   3'- gGGCu---UUGCCCua---CG-CGCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 31358 0.66 0.572618
Target:  5'- aUCCGGcuCGGGGUGaucggGCGAUCG-GUCa -3'
miRNA:   3'- -GGGCUuuGCCCUACg----CGCUGGCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 24168 0.66 0.572618
Target:  5'- cCUCGAcGACGGGcacuUGCcacuCGACCG-GCCg -3'
miRNA:   3'- -GGGCU-UUGCCCu---ACGc---GCUGGCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 30135 0.66 0.562095
Target:  5'- gCCCGA---GGGcgGCGCGccACC-CGUCg -3'
miRNA:   3'- -GGGCUuugCCCuaCGCGC--UGGcGCGG- -5'
26417 5' -58.1 NC_005345.2 + 9154 0.66 0.561046
Target:  5'- aCCCGAGacACGGGcGUGUaggacucgGCGAgcguggcgaggaaUCGCGCUg -3'
miRNA:   3'- -GGGCUU--UGCCC-UACG--------CGCU-------------GGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 48928 0.66 0.558948
Target:  5'- aCCGAGgguguucgaacgcuGCGGGcgGUGUGacGCCGgaUGCCa -3'
miRNA:   3'- gGGCUU--------------UGCCCuaCGCGC--UGGC--GCGG- -5'
26417 5' -58.1 NC_005345.2 + 41546 0.66 0.551625
Target:  5'- aCCUGGucgacGACGucGUGCGCGcgcucGCCGUGCUc -3'
miRNA:   3'- -GGGCU-----UUGCccUACGCGC-----UGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 41516 0.66 0.551625
Target:  5'- uCCCG-AACGcGGA-GCGCGA--GCGUCu -3'
miRNA:   3'- -GGGCuUUGC-CCUaCGCGCUggCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 46079 0.66 0.572618
Target:  5'- gCCGggGCcgccGGGGccUGCGCGGacauccaCGCGgCg -3'
miRNA:   3'- gGGCuuUG----CCCU--ACGCGCUg------GCGCgG- -5'
26417 5' -58.1 NC_005345.2 + 3338 0.66 0.572618
Target:  5'- aCUCGGGcuGCGGGcgccGCGUucGAUCGCGCg -3'
miRNA:   3'- -GGGCUU--UGCCCua--CGCG--CUGGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 21287 0.66 0.572618
Target:  5'- cCCCGucguCGGGG-GCGCcGCCGaggaucgGCCa -3'
miRNA:   3'- -GGGCuuu-GCCCUaCGCGcUGGCg------CGG- -5'
26417 5' -58.1 NC_005345.2 + 30584 0.66 0.593794
Target:  5'- uCCCGAcGCuGGgcGCGCacccGGCgaGCGCCc -3'
miRNA:   3'- -GGGCUuUGcCCuaCGCG----CUGg-CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 16668 0.66 0.593794
Target:  5'- aCCGGAGCGccgucaGGggGUGaCGACCGC-CUg -3'
miRNA:   3'- gGGCUUUGC------CCuaCGC-GCUGGCGcGG- -5'
26417 5' -58.1 NC_005345.2 + 38228 0.66 0.593794
Target:  5'- --gGGAACGGGGacGCGCGgACCgGUGCa -3'
miRNA:   3'- gggCUUUGCCCUa-CGCGC-UGG-CGCGg -5'
26417 5' -58.1 NC_005345.2 + 10302 0.66 0.592732
Target:  5'- aCCCG-AGCGGGAaGCGgGcagagcggaucACCGaugucguCGCCg -3'
miRNA:   3'- -GGGCuUUGCCCUaCGCgC-----------UGGC-------GCGG- -5'
26417 5' -58.1 NC_005345.2 + 47647 0.66 0.583187
Target:  5'- uCCCGAAcaGCGGaGGaGCggacagGUGACCcaugGCGCCu -3'
miRNA:   3'- -GGGCUU--UGCC-CUaCG------CGCUGG----CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 40054 0.66 0.583187
Target:  5'- aCCgCGAcguGCGGGcgGUcgccgGCGACgGCgGCCc -3'
miRNA:   3'- -GG-GCUu--UGCCCuaCG-----CGCUGgCG-CGG- -5'
26417 5' -58.1 NC_005345.2 + 24985 0.66 0.572618
Target:  5'- cCCCGcgccauuucgagGAGCGGGAuccaUGUGUuaucGGuCUGCGCCu -3'
miRNA:   3'- -GGGC------------UUUGCCCU----ACGCG----CU-GGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 24265 0.66 0.572618
Target:  5'- gUCCGAcaGGCGGcagccGAUcaGCGCGGUCGCGUCc -3'
miRNA:   3'- -GGGCU--UUGCC-----CUA--CGCGCUGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.