Results 1 - 20 of 236 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26417 | 5' | -58.1 | NC_005345.2 | + | 40688 | 0.97 | 0.004304 |
Target: 5'- cCCCGAAACGGGAguCGCGACCGCGCCc -3' miRNA: 3'- -GGGCUUUGCCCUacGCGCUGGCGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 30455 | 0.73 | 0.227827 |
Target: 5'- cCCCGAucCGGGcacgcugcGCGCGAuCUGCGUCg -3' miRNA: 3'- -GGGCUuuGCCCua------CGCGCU-GGCGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 14935 | 0.73 | 0.23967 |
Target: 5'- gCUGcAGCGGGcgGCgGCGAaggaUCGCGCCg -3' miRNA: 3'- gGGCuUUGCCCuaCG-CGCU----GGCGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 25148 | 0.66 | 0.604431 |
Target: 5'- aUCGAAugGuGGAUGaccgGCGGCCGgaGCa -3' miRNA: 3'- gGGCUUugC-CCUACg---CGCUGGCg-CGg -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 7525 | 0.76 | 0.15403 |
Target: 5'- aCCCGggGaucgagaucccCGaGGGUGCGaCGGCCGUGCa -3' miRNA: 3'- -GGGCuuU-----------GC-CCUACGC-GCUGGCGCGg -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 24858 | 0.76 | 0.158188 |
Target: 5'- uCCCGcgGCGuGAcgGaCGCGACCGCGCUg -3' miRNA: 3'- -GGGCuuUGCcCUa-C-GCGCUGGCGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 18925 | 0.75 | 0.185323 |
Target: 5'- aCCGGcucaccGCcGGAUGCGCGAUCGuCGCCc -3' miRNA: 3'- gGGCUu-----UGcCCUACGCGCUGGC-GCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 23327 | 0.75 | 0.185323 |
Target: 5'- gCCGGAACaaGGAUGCGaucccgcaGACCGUGCUg -3' miRNA: 3'- gGGCUUUGc-CCUACGCg-------CUGGCGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 18552 | 0.74 | 0.210995 |
Target: 5'- gCUCGggGCGcucgccGGGUGCGCGcCCaGCGUCg -3' miRNA: 3'- -GGGCuuUGC------CCUACGCGCuGG-CGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 13618 | 0.73 | 0.227827 |
Target: 5'- gCCCGAGccccGCGaGGAaccggacgGCGCGGCgugaGCGCCg -3' miRNA: 3'- -GGGCUU----UGC-CCUa-------CGCGCUGg---CGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 44541 | 0.73 | 0.222094 |
Target: 5'- aCCCGGgcAACGGGAacaG-GACCGCGCUg -3' miRNA: 3'- -GGGCU--UUGCCCUacgCgCUGGCGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 15435 | 0.74 | 0.205096 |
Target: 5'- uCCCGAAGCGGGGucggcacggaguuUGUGCagcgucugccGGCUGaCGCCg -3' miRNA: 3'- -GGGCUUUGCCCU-------------ACGCG----------CUGGC-GCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 9698 | 0.79 | 0.091859 |
Target: 5'- gCCGAucAGCGGGccgccGCGUGAgCCGCGCCg -3' miRNA: 3'- gGGCU--UUGCCCua---CGCGCU-GGCGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 39667 | 0.73 | 0.227827 |
Target: 5'- gCUCGAcuCGGGcgGCGUGAucuuccugcaguUCGCGCCc -3' miRNA: 3'- -GGGCUuuGCCCuaCGCGCU------------GGCGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 39249 | 0.76 | 0.146011 |
Target: 5'- gCCCG-GACGGGAagcgcacguucgUGCGCGGC-GCGUCg -3' miRNA: 3'- -GGGCuUUGCCCU------------ACGCGCUGgCGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 11614 | 0.74 | 0.195244 |
Target: 5'- gCCGcuGGCGGGAgUGgGCGgagagcgagcgcACCGCGCCg -3' miRNA: 3'- gGGCu-UUGCCCU-ACgCGC------------UGGCGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 14508 | 0.73 | 0.227827 |
Target: 5'- gCCGAGAcCGGGAgcaGCGC-ACCGCcCCg -3' miRNA: 3'- gGGCUUU-GCCCUa--CGCGcUGGCGcGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 8411 | 0.73 | 0.233686 |
Target: 5'- gCCGGucGACGGG--GCGCGGCUGgaCGCCg -3' miRNA: 3'- gGGCU--UUGCCCuaCGCGCUGGC--GCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 36481 | 0.76 | 0.149972 |
Target: 5'- aCCGAcccGGCGGGuacgccaacgGCGgcCGACCGCGCCc -3' miRNA: 3'- gGGCU---UUGCCCua--------CGC--GCUGGCGCGG- -5' |
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26417 | 5' | -58.1 | NC_005345.2 | + | 26769 | 0.75 | 0.171276 |
Target: 5'- cCCCGgcGCGGG-UGCggcggaucGUGGCCGgCGCCg -3' miRNA: 3'- -GGGCuuUGCCCuACG--------CGCUGGC-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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