miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26418 3' -56.5 NC_005345.2 + 32974 0.66 0.623623
Target:  5'- -gCGUCCGCguaGUccucggcgcAgGCGGCCGGGgUGg -3'
miRNA:   3'- caGCAGGCGa--CA---------UgUGCUGGUCCgAC- -5'
26418 3' -56.5 NC_005345.2 + 12603 0.66 0.623623
Target:  5'- aUCGUCgGCU--ACGCGcucgGCCGGGCa- -3'
miRNA:   3'- cAGCAGgCGAcaUGUGC----UGGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 21995 0.66 0.62252
Target:  5'- cUCGggCCGCUGccGCACGgcggcauGCCGGGCc- -3'
miRNA:   3'- cAGCa-GGCGACa-UGUGC-------UGGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 14753 0.66 0.601587
Target:  5'- -gUGUCgGUgacGUGCuCGACCGGGCUc -3'
miRNA:   3'- caGCAGgCGa--CAUGuGCUGGUCCGAc -5'
26418 3' -56.5 NC_005345.2 + 15984 0.66 0.601587
Target:  5'- gGUCGUCCGUaccucUGUGgGCGACguG-CUGc -3'
miRNA:   3'- -CAGCAGGCG-----ACAUgUGCUGguCcGAC- -5'
26418 3' -56.5 NC_005345.2 + 15795 0.66 0.601587
Target:  5'- -cCGUCCGgUGUGgGCGGCaCGccGGCUa -3'
miRNA:   3'- caGCAGGCgACAUgUGCUG-GU--CCGAc -5'
26418 3' -56.5 NC_005345.2 + 4650 0.66 0.58403
Target:  5'- cGUCGcCUGCUGUGCcuCGGCCGucgccuucgcugcucGGCUc -3'
miRNA:   3'- -CAGCaGGCGACAUGu-GCUGGU---------------CCGAc -5'
26418 3' -56.5 NC_005345.2 + 34565 0.66 0.579656
Target:  5'- -cCGcUCCGCcuUGUguagugccgACACGGCCGGGCc- -3'
miRNA:   3'- caGC-AGGCG--ACA---------UGUGCUGGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 26929 0.66 0.579655
Target:  5'- -aCGaCgCGCUGUcggguugcuGCGCGACC-GGCUGa -3'
miRNA:   3'- caGCaG-GCGACA---------UGUGCUGGuCCGAC- -5'
26418 3' -56.5 NC_005345.2 + 37771 0.67 0.557899
Target:  5'- cUCGcCCGCaggcGgcCGCGACCGgGGCUGc -3'
miRNA:   3'- cAGCaGGCGa---CauGUGCUGGU-CCGAC- -5'
26418 3' -56.5 NC_005345.2 + 17390 0.67 0.557899
Target:  5'- -cCGUCCGCggugGUcCGCGGgUAGGCg- -3'
miRNA:   3'- caGCAGGCGa---CAuGUGCUgGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 15645 0.67 0.547105
Target:  5'- gGUCGgggCCGCa--AUGCGACCGGGCc- -3'
miRNA:   3'- -CAGCa--GGCGacaUGUGCUGGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 25293 0.67 0.547105
Target:  5'- cUCG-CCGUcGUcC-CGGCCGGGCUGg -3'
miRNA:   3'- cAGCaGGCGaCAuGuGCUGGUCCGAC- -5'
26418 3' -56.5 NC_005345.2 + 9529 0.67 0.515157
Target:  5'- cGUCGUCCGUgcggGUccACACG-CCGaGCUGc -3'
miRNA:   3'- -CAGCAGGCGa---CA--UGUGCuGGUcCGAC- -5'
26418 3' -56.5 NC_005345.2 + 9283 0.68 0.504673
Target:  5'- uGUCGgCCGCggcGUACcucGCGGCCGGcGUUGa -3'
miRNA:   3'- -CAGCaGGCGa--CAUG---UGCUGGUC-CGAC- -5'
26418 3' -56.5 NC_005345.2 + 48325 0.68 0.504673
Target:  5'- cUCGUCCGCggUGUG-ACGGCCcccGGGCg- -3'
miRNA:   3'- cAGCAGGCG--ACAUgUGCUGG---UCCGac -5'
26418 3' -56.5 NC_005345.2 + 45811 0.68 0.473802
Target:  5'- gGUCGUCCGUcGU-CGCGACCGugacgugcacGGCg- -3'
miRNA:   3'- -CAGCAGGCGaCAuGUGCUGGU----------CCGac -5'
26418 3' -56.5 NC_005345.2 + 45940 0.68 0.463722
Target:  5'- -cUGUCCGCUGU-CAUcGCCGGGUa- -3'
miRNA:   3'- caGCAGGCGACAuGUGcUGGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 12863 0.69 0.453757
Target:  5'- -aUGUCCcaGUUGUugauCGCGGCCGGGUUGc -3'
miRNA:   3'- caGCAGG--CGACAu---GUGCUGGUCCGAC- -5'
26418 3' -56.5 NC_005345.2 + 18632 0.69 0.443908
Target:  5'- aUCGUCCGCUgccgGUACcCGcCCGGGUUc -3'
miRNA:   3'- cAGCAGGCGA----CAUGuGCuGGUCCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.