Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26419 | 5' | -57.2 | NC_005345.2 | + | 5579 | 0.66 | 0.590163 |
Target: 5'- cGGGUCAGuuGGCgAGGCGGUCGGcgagcuuGUCGg -3' miRNA: 3'- cCUCGGUU--CCG-UCCGCUAGUC-------CAGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 45406 | 0.66 | 0.580351 |
Target: 5'- cGGAGCCAGuccGaCAGGCGGcgCGGG-CGa -3' miRNA: 3'- -CCUCGGUUc--C-GUCCGCUa-GUCCaGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 44350 | 0.66 | 0.580351 |
Target: 5'- cGAGCUgccGGgGGGCGAUCgucaccucgaacGGGUCGc -3' miRNA: 3'- cCUCGGuu-CCgUCCGCUAG------------UCCAGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 32996 | 0.66 | 0.580351 |
Target: 5'- aGGcGGCCGGGGUggcggGGGCGucgacgAUCGGGcUCGg -3' miRNA: 3'- -CC-UCGGUUCCG-----UCCGC------UAGUCC-AGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 14416 | 0.66 | 0.580351 |
Target: 5'- --cGCCGAcGCcugccGGGCGAUCgAGGUCGc -3' miRNA: 3'- ccuCGGUUcCG-----UCCGCUAG-UCCAGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 20599 | 0.66 | 0.580351 |
Target: 5'- cGGGGCCGgcGGGCGcucgcaagucucGGCGA-CGGGgCGa -3' miRNA: 3'- -CCUCGGU--UCCGU------------CCGCUaGUCCaGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 39204 | 0.66 | 0.547927 |
Target: 5'- cGGGCCGcGGGUuGGCGAccgUCGGGcCGa -3' miRNA: 3'- cCUCGGU-UCCGuCCGCU---AGUCCaGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 9331 | 0.66 | 0.541507 |
Target: 5'- cGAuGCCGAGGguGGUcggcauguccacgguGAUCAGGggcagCGUc -3' miRNA: 3'- cCU-CGGUUCCguCCG---------------CUAGUCCa----GCA- -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 44634 | 0.67 | 0.526627 |
Target: 5'- --cGUCGAGGCAGaccggaGCGAUCccGGUCGg -3' miRNA: 3'- ccuCGGUUCCGUC------CGCUAGu-CCAGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 5266 | 0.67 | 0.526627 |
Target: 5'- cGGGCggCAGGGCGGGCucgggGGUCGGGUa-- -3' miRNA: 3'- cCUCG--GUUCCGUCCG-----CUAGUCCAgca -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 45560 | 0.67 | 0.526627 |
Target: 5'- -cGGCCGAGGUcgGGGCGggCcGGUUGc -3' miRNA: 3'- ccUCGGUUCCG--UCCGCuaGuCCAGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 6532 | 0.67 | 0.526627 |
Target: 5'- cGGGGCggggCGGGGCgGGGCGGUgGGGgaCGUg -3' miRNA: 3'- -CCUCG----GUUCCG-UCCGCUAgUCCa-GCA- -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 15057 | 0.67 | 0.516094 |
Target: 5'- -cGGCCcGGcGCAGGaacuCGAUCAGGUCc- -3' miRNA: 3'- ccUCGGuUC-CGUCC----GCUAGUCCAGca -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 10051 | 0.67 | 0.505646 |
Target: 5'- --cGCCGAGGac-GCGAUCGGGuUCGa -3' miRNA: 3'- ccuCGGUUCCgucCGCUAGUCC-AGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 33403 | 0.67 | 0.485032 |
Target: 5'- -cGGUCGAGGUcGGCG-UCGGGUaCGUa -3' miRNA: 3'- ccUCGGUUCCGuCCGCuAGUCCA-GCA- -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 21756 | 0.68 | 0.47185 |
Target: 5'- aGGGCCccugugcugcucgcuGGCGGGCGAgccgGGGUCGg -3' miRNA: 3'- cCUCGGuu-------------CCGUCCGCUag--UCCAGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 37570 | 0.68 | 0.45489 |
Target: 5'- cGAGgCGGGcGCAGGCGGgcugCAGG-CGg -3' miRNA: 3'- cCUCgGUUC-CGUCCGCUa---GUCCaGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 2582 | 0.68 | 0.45489 |
Target: 5'- cGGGGCCGAGGCugacGGCGA--GGGa--- -3' miRNA: 3'- -CCUCGGUUCCGu---CCGCUagUCCagca -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 29658 | 0.68 | 0.44507 |
Target: 5'- gGGAGaCGGGGCGGGaGAaccgCAGGUCa- -3' miRNA: 3'- -CCUCgGUUCCGUCCgCUa---GUCCAGca -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 6822 | 0.68 | 0.435369 |
Target: 5'- cGGAcGCCAuGGCGGGCGGgaUCGacauGGUCc- -3' miRNA: 3'- -CCU-CGGUuCCGUCCGCU--AGU----CCAGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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