miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26423 3' -54.5 NC_005345.2 + 48539 0.66 0.751883
Target:  5'- aUCCGCACcaugGUCACccgGUGGcGGCCGacucccACGa -3'
miRNA:   3'- -AGGCGUG----UAGUG---UACC-CUGGCgu----UGC- -5'
26423 3' -54.5 NC_005345.2 + 17930 0.66 0.751883
Target:  5'- gCCGUACAcccggccgCACccGGGugCGCAcccGCGc -3'
miRNA:   3'- aGGCGUGUa-------GUGuaCCCugGCGU---UGC- -5'
26423 3' -54.5 NC_005345.2 + 9084 0.66 0.751883
Target:  5'- gCCGC-CGUCGCcgGcGACCGCccgcACGu -3'
miRNA:   3'- aGGCGuGUAGUGuaCcCUGGCGu---UGC- -5'
26423 3' -54.5 NC_005345.2 + 12764 0.66 0.751883
Target:  5'- gCCGCgGCAgacguggcgCGCGUGGaccacCCGCAACGa -3'
miRNA:   3'- aGGCG-UGUa--------GUGUACCcu---GGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 31003 0.66 0.751883
Target:  5'- gCUGUACccgaCGCcgGGGAUCGgGACGa -3'
miRNA:   3'- aGGCGUGua--GUGuaCCCUGGCgUUGC- -5'
26423 3' -54.5 NC_005345.2 + 45578 0.66 0.741353
Target:  5'- gCCGguUGcgGCcgGGGGCCGCgAACGg -3'
miRNA:   3'- aGGCguGUagUGuaCCCUGGCG-UUGC- -5'
26423 3' -54.5 NC_005345.2 + 5634 0.66 0.741353
Target:  5'- cUCCGCGag-CGCcgGGuucGCCGCGACc -3'
miRNA:   3'- -AGGCGUguaGUGuaCCc--UGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 44217 0.66 0.730709
Target:  5'- aCCGCcacccggccggaGCG-CACGUGcGGcuGCCGCAGCa -3'
miRNA:   3'- aGGCG------------UGUaGUGUAC-CC--UGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 15766 0.66 0.730709
Target:  5'- gCUGCAUcgUAUccGGGGCCGCGcCa -3'
miRNA:   3'- aGGCGUGuaGUGuaCCCUGGCGUuGc -5'
26423 3' -54.5 NC_005345.2 + 6883 0.66 0.730709
Target:  5'- gCCGCug--CGCAUGuGGAUCgaGCAGCGa -3'
miRNA:   3'- aGGCGuguaGUGUAC-CCUGG--CGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 14880 0.66 0.727496
Target:  5'- aCCGCGCgcagccggucaaggGUCAgGUcGaGGACCGCGuucGCGg -3'
miRNA:   3'- aGGCGUG--------------UAGUgUA-C-CCUGGCGU---UGC- -5'
26423 3' -54.5 NC_005345.2 + 22006 0.66 0.719965
Target:  5'- gCCGCACGgcgGCAUgccGGGcCCGCcgGACGg -3'
miRNA:   3'- aGGCGUGUag-UGUA---CCCuGGCG--UUGC- -5'
26423 3' -54.5 NC_005345.2 + 19910 0.66 0.719965
Target:  5'- gCUGCGCAUCGC--GGGcgaugaACgGCAGCGc -3'
miRNA:   3'- aGGCGUGUAGUGuaCCC------UGgCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 875 0.66 0.719965
Target:  5'- cCCGaCGCAUCGCA-GGGaACgGCGucuCGa -3'
miRNA:   3'- aGGC-GUGUAGUGUaCCC-UGgCGUu--GC- -5'
26423 3' -54.5 NC_005345.2 + 2047 0.66 0.709131
Target:  5'- cCCgGCGCggC-CcgGcGGGCCGCGGCGa -3'
miRNA:   3'- aGG-CGUGuaGuGuaC-CCUGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 12374 0.66 0.69822
Target:  5'- cCCGaCGCcUCGCAgcggagGGGAagGCAGCGg -3'
miRNA:   3'- aGGC-GUGuAGUGUa-----CCCUggCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 31541 0.66 0.69822
Target:  5'- -gCGUGCAUCACAgccccuUGGG-CCGCGggcagaugGCGg -3'
miRNA:   3'- agGCGUGUAGUGU------ACCCuGGCGU--------UGC- -5'
26423 3' -54.5 NC_005345.2 + 14345 0.67 0.687243
Target:  5'- -gCGCACG--GCGUGcgcgaGGACCGCGACc -3'
miRNA:   3'- agGCGUGUagUGUAC-----CCUGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 22387 0.67 0.676213
Target:  5'- gCCGCACccgCGCcgGGGACuCGUcgaguuccucGGCGa -3'
miRNA:   3'- aGGCGUGua-GUGuaCCCUG-GCG----------UUGC- -5'
26423 3' -54.5 NC_005345.2 + 19124 0.67 0.676213
Target:  5'- aCCGCAUgGUgGC-UGcGGGCCGCAugGc -3'
miRNA:   3'- aGGCGUG-UAgUGuAC-CCUGGCGUugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.