miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26423 3' -54.5 NC_005345.2 + 48539 0.66 0.751883
Target:  5'- aUCCGCACcaugGUCACccgGUGGcGGCCGacucccACGa -3'
miRNA:   3'- -AGGCGUG----UAGUG---UACC-CUGGCgu----UGC- -5'
26423 3' -54.5 NC_005345.2 + 38869 0.75 0.26418
Target:  5'- cCCGCGCcgCAUcuccucgGGGAUCGCGGCGu -3'
miRNA:   3'- aGGCGUGuaGUGua-----CCCUGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 39642 0.73 0.31558
Target:  5'- gUCUGCGCG-CACA-GGGcCCGCGACu -3'
miRNA:   3'- -AGGCGUGUaGUGUaCCCuGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 24130 0.73 0.31558
Target:  5'- gUCGUACGUCGCGaacgccucGGcGACCGCGGCGa -3'
miRNA:   3'- aGGCGUGUAGUGUa-------CC-CUGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 26818 0.72 0.401454
Target:  5'- cCCGCGCccccaCACGUGcagacccgaaccGGACCGCGACa -3'
miRNA:   3'- aGGCGUGua---GUGUAC------------CCUGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 2517 0.7 0.499737
Target:  5'- uUCCGCugGCAUCgACGUGGGGgguuuccacgcggUgGCGACGg -3'
miRNA:   3'- -AGGCG--UGUAG-UGUACCCU-------------GgCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 24293 0.69 0.532695
Target:  5'- gUCGCGucCGUCACGccgcGGGACCGCuugcGCGa -3'
miRNA:   3'- aGGCGU--GUAGUGUa---CCCUGGCGu---UGC- -5'
26423 3' -54.5 NC_005345.2 + 14393 0.67 0.654034
Target:  5'- gCCGCGCGUCACcgcc-GCCGCcGCGa -3'
miRNA:   3'- aGGCGUGUAGUGuacccUGGCGuUGC- -5'
26423 3' -54.5 NC_005345.2 + 40464 0.67 0.665139
Target:  5'- gCCGCccACGUCACGgccaccGCCGCGGCGa -3'
miRNA:   3'- aGGCG--UGUAGUGUaccc--UGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 22387 0.67 0.676213
Target:  5'- gCCGCACccgCGCcgGGGACuCGUcgaguuccucGGCGa -3'
miRNA:   3'- aGGCGUGua-GUGuaCCCUG-GCG----------UUGC- -5'
26423 3' -54.5 NC_005345.2 + 31541 0.66 0.69822
Target:  5'- -gCGUGCAUCACAgccccuUGGG-CCGCGggcagaugGCGg -3'
miRNA:   3'- agGCGUGUAGUGU------ACCCuGGCGU--------UGC- -5'
26423 3' -54.5 NC_005345.2 + 31003 0.66 0.751883
Target:  5'- gCUGUACccgaCGCcgGGGAUCGgGACGa -3'
miRNA:   3'- aGGCGUGua--GUGuaCCCUGGCgUUGC- -5'
26423 3' -54.5 NC_005345.2 + 5634 0.66 0.741353
Target:  5'- cUCCGCGag-CGCcgGGuucGCCGCGACc -3'
miRNA:   3'- -AGGCGUguaGUGuaCCc--UGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 45578 0.66 0.741353
Target:  5'- gCCGguUGcgGCcgGGGGCCGCgAACGg -3'
miRNA:   3'- aGGCguGUagUGuaCCCUGGCG-UUGC- -5'
26423 3' -54.5 NC_005345.2 + 44217 0.66 0.730709
Target:  5'- aCCGCcacccggccggaGCG-CACGUGcGGcuGCCGCAGCa -3'
miRNA:   3'- aGGCG------------UGUaGUGUAC-CC--UGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 14880 0.66 0.727496
Target:  5'- aCCGCGCgcagccggucaaggGUCAgGUcGaGGACCGCGuucGCGg -3'
miRNA:   3'- aGGCGUG--------------UAGUgUA-C-CCUGGCGU---UGC- -5'
26423 3' -54.5 NC_005345.2 + 875 0.66 0.719965
Target:  5'- cCCGaCGCAUCGCA-GGGaACgGCGucuCGa -3'
miRNA:   3'- aGGC-GUGUAGUGUaCCC-UGgCGUu--GC- -5'
26423 3' -54.5 NC_005345.2 + 19910 0.66 0.719965
Target:  5'- gCUGCGCAUCGC--GGGcgaugaACgGCAGCGc -3'
miRNA:   3'- aGGCGUGUAGUGuaCCC------UGgCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 9084 0.66 0.751883
Target:  5'- gCCGC-CGUCGCcgGcGACCGCccgcACGu -3'
miRNA:   3'- aGGCGuGUAGUGuaCcCUGGCGu---UGC- -5'
26423 3' -54.5 NC_005345.2 + 13709 0.73 0.348187
Target:  5'- gCgGCGaguUCACAUGGGACCcCGACGc -3'
miRNA:   3'- aGgCGUgu-AGUGUACCCUGGcGUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.