miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26425 5' -62.3 NC_005345.2 + 43794 1.1 0.000162
Target:  5'- uGGAGAUCGCCGGGCAGCGCGCCCACGg -3'
miRNA:   3'- -CCUCUAGCGGCCCGUCGCGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 42579 0.8 0.033064
Target:  5'- aGGGGGUCGCCGGGCGGCaggaucgaguacaGCUCGCGa -3'
miRNA:   3'- -CCUCUAGCGGCCCGUCGcg-----------CGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 30022 0.8 0.034586
Target:  5'- cGAGGUCGCCGaGCGGaucgGCGCCCACGc -3'
miRNA:   3'- cCUCUAGCGGCcCGUCg---CGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 29292 0.8 0.034586
Target:  5'- cGAGGUCGcCCGaGGCAGCGCGCUCGUGa -3'
miRNA:   3'- cCUCUAGC-GGC-CCGUCGCGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 18555 0.8 0.037628
Target:  5'- cGGGGcgcUCGCCGGGU-GCGCGCCCAgCGu -3'
miRNA:   3'- -CCUCu--AGCGGCCCGuCGCGCGGGU-GC- -5'
26425 5' -62.3 NC_005345.2 + 12758 0.8 0.037628
Target:  5'- aGGGGGUcccacaCGCCGcGGCcgcggAGCGCGCCCGCGu -3'
miRNA:   3'- -CCUCUA------GCGGC-CCG-----UCGCGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 22858 0.77 0.058827
Target:  5'- --cGGUCGCCGGGuCGGUGCGCUuCGCGa -3'
miRNA:   3'- ccuCUAGCGGCCC-GUCGCGCGG-GUGC- -5'
26425 5' -62.3 NC_005345.2 + 33193 0.74 0.101889
Target:  5'- cGAcGAUCG-CGGGCAGCGUGCUcagCACGg -3'
miRNA:   3'- cCU-CUAGCgGCCCGUCGCGCGG---GUGC- -5'
26425 5' -62.3 NC_005345.2 + 41877 0.74 0.104687
Target:  5'- cGGcGAUCGCgCGGGCGGCGaCGCUUGuCGg -3'
miRNA:   3'- -CCuCUAGCG-GCCCGUCGC-GCGGGU-GC- -5'
26425 5' -62.3 NC_005345.2 + 37127 0.73 0.113519
Target:  5'- aGGGGccacguaGCCGGGCAGCGuCGUCC-CGa -3'
miRNA:   3'- -CCUCuag----CGGCCCGUCGC-GCGGGuGC- -5'
26425 5' -62.3 NC_005345.2 + 8249 0.73 0.116615
Target:  5'- aGGAcGUCGCCGGGUucgAGCGCgggGUUCACGa -3'
miRNA:   3'- -CCUcUAGCGGCCCG---UCGCG---CGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 3669 0.73 0.119789
Target:  5'- cGGGAUCgugucguuuGCCGGGUGGU-CGCCCACGu -3'
miRNA:   3'- cCUCUAG---------CGGCCCGUCGcGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 33505 0.73 0.123043
Target:  5'- cGGAGAUCGgcgagcaguCCGGGCAgGCGgCGagCCGCGg -3'
miRNA:   3'- -CCUCUAGC---------GGCCCGU-CGC-GCg-GGUGC- -5'
26425 5' -62.3 NC_005345.2 + 2910 0.72 0.133305
Target:  5'- -cGGAUCGgcggaCCGGGCAGCG-GCCCAaCGc -3'
miRNA:   3'- ccUCUAGC-----GGCCCGUCGCgCGGGU-GC- -5'
26425 5' -62.3 NC_005345.2 + 39414 0.72 0.136898
Target:  5'- cGGGAgCGUCGGcGCGGuCGCGgCCCGCGc -3'
miRNA:   3'- cCUCUaGCGGCC-CGUC-GCGC-GGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 12869 0.72 0.147824
Target:  5'- uGGGGGUggcucgcCGCCGGGUGGC-CGCUCGCc -3'
miRNA:   3'- -CCUCUA-------GCGGCCCGUCGcGCGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 46386 0.72 0.148215
Target:  5'- cGAGGcCGCCGcGcGUGGCGCGCuCCACa -3'
miRNA:   3'- cCUCUaGCGGC-C-CGUCGCGCG-GGUGc -5'
26425 5' -62.3 NC_005345.2 + 5284 0.71 0.156226
Target:  5'- cGGGGGUCGgguacugCGGGgGGCGgGCCCAUc -3'
miRNA:   3'- -CCUCUAGCg------GCCCgUCGCgCGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 46788 0.71 0.160377
Target:  5'- cGAGGUCGCgacCGGGCuGCGCcGCCaagCACGc -3'
miRNA:   3'- cCUCUAGCG---GCCCGuCGCG-CGG---GUGC- -5'
26425 5' -62.3 NC_005345.2 + 28727 0.71 0.164198
Target:  5'- cGAGAcgcUCGUCGGGUuccuguacucGGCccugcagGCGCCCGCGg -3'
miRNA:   3'- cCUCU---AGCGGCCCG----------UCG-------CGCGGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.