miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26425 5' -62.3 NC_005345.2 + 1168 0.66 0.338003
Target:  5'- aGGGGAgcgugCGCggcgcacaCGGGCGGCucgGCaguccgGCCCGCGg -3'
miRNA:   3'- -CCUCUa----GCG--------GCCCGUCG---CG------CGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 2349 0.68 0.25999
Target:  5'- cGAGcgUGCUuGGCGGCGCaGCCCggucGCGa -3'
miRNA:   3'- cCUCuaGCGGcCCGUCGCG-CGGG----UGC- -5'
26425 5' -62.3 NC_005345.2 + 2910 0.72 0.133305
Target:  5'- -cGGAUCGgcggaCCGGGCAGCG-GCCCAaCGc -3'
miRNA:   3'- ccUCUAGC-----GGCCCGUCGCgCGGGU-GC- -5'
26425 5' -62.3 NC_005345.2 + 3014 0.67 0.322636
Target:  5'- cGAGGccaguaGCCGGGCGGCGgcagcaUGCUCGCu -3'
miRNA:   3'- cCUCUag----CGGCCCGUCGC------GCGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 3166 0.66 0.345883
Target:  5'- cGAGcUCGUCGGGguGCcGgGUCgGCGa -3'
miRNA:   3'- cCUCuAGCGGCCCguCG-CgCGGgUGC- -5'
26425 5' -62.3 NC_005345.2 + 3669 0.73 0.119789
Target:  5'- cGGGAUCgugucguuuGCCGGGUGGU-CGCCCACGu -3'
miRNA:   3'- cCUCUAG---------CGGCCCGUCGcGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 3998 0.66 0.345883
Target:  5'- --cGGUCGgaCGagccGCAGCGCGUCCGCGu -3'
miRNA:   3'- ccuCUAGCg-GCc---CGUCGCGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 4162 0.68 0.253677
Target:  5'- cGGGuGUCGaCGcGGCAG-GCGCUCACGg -3'
miRNA:   3'- -CCUcUAGCgGC-CCGUCgCGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 4586 0.69 0.243839
Target:  5'- cGGuGAUCGCCGcgaacGCAGCGCgguccuguucccguuGCCCGgGu -3'
miRNA:   3'- -CCuCUAGCGGCc----CGUCGCG---------------CGGGUgC- -5'
26425 5' -62.3 NC_005345.2 + 5195 0.69 0.241429
Target:  5'- cGAGGUCcgccccggcacgGCCGGGCAGCucGCgGCCgGCc -3'
miRNA:   3'- cCUCUAG------------CGGCCCGUCG--CG-CGGgUGc -5'
26425 5' -62.3 NC_005345.2 + 5284 0.71 0.156226
Target:  5'- cGGGGGUCGgguacugCGGGgGGCGgGCCCAUc -3'
miRNA:   3'- -CCUCUAGCg------GCCCgUCGCgCGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 5634 0.66 0.345089
Target:  5'- cGGuGAUCGCCGacccgaucGGCaccgcccGGCGgGCCCGg- -3'
miRNA:   3'- -CCuCUAGCGGC--------CCG-------UCGCgCGGGUgc -5'
26425 5' -62.3 NC_005345.2 + 8249 0.73 0.116615
Target:  5'- aGGAcGUCGCCGGGUucgAGCGCgggGUUCACGa -3'
miRNA:   3'- -CCUcUAGCGGCCCG---UCGCG---CGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 9027 0.67 0.293485
Target:  5'- cGGGAUCagaGCCGGGuCGGCGUGUgaCACc -3'
miRNA:   3'- cCUCUAG---CGGCCC-GUCGCGCGg-GUGc -5'
26425 5' -62.3 NC_005345.2 + 10092 0.69 0.235492
Target:  5'- --cGAUCGCCGccuGCGuaGCGCCCACc -3'
miRNA:   3'- ccuCUAGCGGCc--CGUcgCGCGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 10544 0.69 0.241429
Target:  5'- cGAGAUCGCCGuGUccgaGGCGCuCgCCACGa -3'
miRNA:   3'- cCUCUAGCGGCcCG----UCGCGcG-GGUGC- -5'
26425 5' -62.3 NC_005345.2 + 11510 0.66 0.338003
Target:  5'- --cGA-CGCCGGacuGCAGC-CGCUCACGa -3'
miRNA:   3'- ccuCUaGCGGCC---CGUCGcGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 11567 0.66 0.345883
Target:  5'- ---cAUCGCCcGGCAGCucgacgacggGCGCCuCGCGg -3'
miRNA:   3'- ccucUAGCGGcCCGUCG----------CGCGG-GUGC- -5'
26425 5' -62.3 NC_005345.2 + 12432 0.69 0.241429
Target:  5'- cGAGGcgcgUCGCgCGGGCuaccucGCGCaGCUCGCGg -3'
miRNA:   3'- cCUCU----AGCG-GCCCGu-----CGCG-CGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 12758 0.8 0.037628
Target:  5'- aGGGGGUcccacaCGCCGcGGCcgcggAGCGCGCCCGCGu -3'
miRNA:   3'- -CCUCUA------GCGGC-CCG-----UCGCGCGGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.