miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26425 5' -62.3 NC_005345.2 + 43794 1.1 0.000162
Target:  5'- uGGAGAUCGCCGGGCAGCGCGCCCACGg -3'
miRNA:   3'- -CCUCUAGCGGCCCGUCGCGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 20858 0.69 0.235492
Target:  5'- cGGAGAgagUGCgGgaGGUAGCGCgcgaGCCCGCa -3'
miRNA:   3'- -CCUCUa--GCGgC--CCGUCGCG----CGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 14669 0.69 0.241429
Target:  5'- ------gGCCGGGCGGCGuCGCCgAUGc -3'
miRNA:   3'- ccucuagCGGCCCGUCGC-GCGGgUGC- -5'
26425 5' -62.3 NC_005345.2 + 33185 0.66 0.353895
Target:  5'- ---cAUCGCCaacuGGCAGCGCGCgaACGa -3'
miRNA:   3'- ccucUAGCGGc---CCGUCGCGCGggUGC- -5'
26425 5' -62.3 NC_005345.2 + 41877 0.74 0.104687
Target:  5'- cGGcGAUCGCgCGGGCGGCGaCGCUUGuCGg -3'
miRNA:   3'- -CCuCUAGCG-GCCCGUCGC-GCGGGU-GC- -5'
26425 5' -62.3 NC_005345.2 + 33505 0.73 0.123043
Target:  5'- cGGAGAUCGgcgagcaguCCGGGCAgGCGgCGagCCGCGg -3'
miRNA:   3'- -CCUCUAGC---------GGCCCGU-CGC-GCg-GGUGC- -5'
26425 5' -62.3 NC_005345.2 + 46386 0.72 0.148215
Target:  5'- cGAGGcCGCCGcGcGUGGCGCGCuCCACa -3'
miRNA:   3'- cCUCUaGCGGC-C-CGUCGCGCG-GGUGc -5'
26425 5' -62.3 NC_005345.2 + 46788 0.71 0.160377
Target:  5'- cGAGGUCGCgacCGGGCuGCGCcGCCaagCACGc -3'
miRNA:   3'- cCUCUAGCG---GCCCGuCGCG-CGG---GUGC- -5'
26425 5' -62.3 NC_005345.2 + 29659 0.71 0.173432
Target:  5'- -aAGGUCGCCGucgaCGGCGUGUCCACGc -3'
miRNA:   3'- ccUCUAGCGGCcc--GUCGCGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 22516 0.69 0.229679
Target:  5'- -cGGGUCGCCcGGCcGgGCGCCCgacACGg -3'
miRNA:   3'- ccUCUAGCGGcCCGuCgCGCGGG---UGC- -5'
26425 5' -62.3 NC_005345.2 + 42953 0.69 0.207626
Target:  5'- cGGAcGG--GCCGGGCGGCaCGCgCACGa -3'
miRNA:   3'- -CCU-CUagCGGCCCGUCGcGCGgGUGC- -5'
26425 5' -62.3 NC_005345.2 + 31585 0.71 0.168539
Target:  5'- -cAGcUCuGCCGGGCccugcucGGCGCgGCCCGCGg -3'
miRNA:   3'- ccUCuAG-CGGCCCG-------UCGCG-CGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 29292 0.8 0.034586
Target:  5'- cGAGGUCGcCCGaGGCAGCGCGCUCGUGa -3'
miRNA:   3'- cCUCUAGC-GGC-CCGUCGCGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 41618 0.69 0.212962
Target:  5'- cGGGAUcagcaccacgacCGCCGccGGCAGCaCGCCCACc -3'
miRNA:   3'- cCUCUA------------GCGGC--CCGUCGcGCGGGUGc -5'
26425 5' -62.3 NC_005345.2 + 30022 0.8 0.034586
Target:  5'- cGAGGUCGCCGaGCGGaucgGCGCCCACGc -3'
miRNA:   3'- cCUCUAGCGGCcCGUCg---CGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 28727 0.71 0.164198
Target:  5'- cGAGAcgcUCGUCGGGUuccuguacucGGCccugcagGCGCCCGCGg -3'
miRNA:   3'- cCUCU---AGCGGCCCG----------UCG-------CGCGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 45369 0.69 0.216766
Target:  5'- cGuGAUCGCCacguccggcgagugGGGguGUGCcaaGCCCACGc -3'
miRNA:   3'- cCuCUAGCGG--------------CCCguCGCG---CGGGUGC- -5'
26425 5' -62.3 NC_005345.2 + 10544 0.69 0.241429
Target:  5'- cGAGAUCGCCGuGUccgaGGCGCuCgCCACGa -3'
miRNA:   3'- cCUCUAGCGGCcCG----UCGCGcG-GGUGC- -5'
26425 5' -62.3 NC_005345.2 + 18555 0.8 0.037628
Target:  5'- cGGGGcgcUCGCCGGGU-GCGCGCCCAgCGu -3'
miRNA:   3'- -CCUCu--AGCGGCCCGuCGCGCGGGU-GC- -5'
26425 5' -62.3 NC_005345.2 + 12869 0.72 0.147824
Target:  5'- uGGGGGUggcucgcCGCCGGGUGGC-CGCUCGCc -3'
miRNA:   3'- -CCUCUA-------GCGGCCCGUCGcGCGGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.