miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2643 3' -61.6 NC_001491.2 + 12856 0.68 0.532999
Target:  5'- aGCGCCaCGcgcCGCCGCCUgugCCUGCg- -3'
miRNA:   3'- gCGUGG-GUuu-GCGGCGGGa--GGGCGag -5'
2643 3' -61.6 NC_001491.2 + 27367 0.68 0.532999
Target:  5'- gCGCACUgAuugcGCGCgGCCCUCCgcgaGCUg -3'
miRNA:   3'- -GCGUGGgUu---UGCGgCGGGAGGg---CGAg -5'
2643 3' -61.6 NC_001491.2 + 123493 0.68 0.542586
Target:  5'- uGCGCUCGacaGACGCCcugaCCCUCCguagcUGCUCa -3'
miRNA:   3'- gCGUGGGU---UUGCGGc---GGGAGG-----GCGAG- -5'
2643 3' -61.6 NC_001491.2 + 112350 0.68 0.55223
Target:  5'- gGCACCCAcg-GCuUGUCCgggCCUGCUCg -3'
miRNA:   3'- gCGUGGGUuugCG-GCGGGa--GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 32441 0.68 0.558041
Target:  5'- gGCGCCCGcucccaGCCGCCCgggaggaggccuccUCCCuccggggGCUCg -3'
miRNA:   3'- gCGUGGGUuug---CGGCGGG--------------AGGG-------CGAG- -5'
2643 3' -61.6 NC_001491.2 + 124822 0.68 0.561924
Target:  5'- -uCACCCAGACGgUGUUCUCCgCGCg- -3'
miRNA:   3'- gcGUGGGUUUGCgGCGGGAGG-GCGag -5'
2643 3' -61.6 NC_001491.2 + 89396 0.67 0.580465
Target:  5'- uGCGCCU--GCGCUGCgaagcauCCgcagucgCCCGCUCu -3'
miRNA:   3'- gCGUGGGuuUGCGGCG-------GGa------GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 40829 0.67 0.591258
Target:  5'- aGCcCCCcuuGGACGaCUGCCC-CCCGCg- -3'
miRNA:   3'- gCGuGGG---UUUGC-GGCGGGaGGGCGag -5'
2643 3' -61.6 NC_001491.2 + 146226 0.67 0.591258
Target:  5'- aGCGCCCcguuuAGCGCCGCCa-CCCaGUa- -3'
miRNA:   3'- gCGUGGGu----UUGCGGCGGgaGGG-CGag -5'
2643 3' -61.6 NC_001491.2 + 2852 0.67 0.6011
Target:  5'- gGgGCUCgGAGCGCCGCUUg-CCGCUCu -3'
miRNA:   3'- gCgUGGG-UUUGCGGCGGGagGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 110418 0.67 0.6011
Target:  5'- aCG-AUCgCAAACGCCggGCCCacUCCCGCUa -3'
miRNA:   3'- -GCgUGG-GUUUGCGG--CGGG--AGGGCGAg -5'
2643 3' -61.6 NC_001491.2 + 2455 0.67 0.610963
Target:  5'- aGCucCCCgAAGCGCgCGCCgUCCCGggCc -3'
miRNA:   3'- gCGu-GGG-UUUGCG-GCGGgAGGGCgaG- -5'
2643 3' -61.6 NC_001491.2 + 76238 0.67 0.614913
Target:  5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGCa- -3'
miRNA:   3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGag -5'
2643 3' -61.6 NC_001491.2 + 33392 0.67 0.620841
Target:  5'- gGCuACCCGGcccAgGCCGCCgCUgCCGCg- -3'
miRNA:   3'- gCG-UGGGUU---UgCGGCGG-GAgGGCGag -5'
2643 3' -61.6 NC_001491.2 + 27088 0.67 0.620841
Target:  5'- gCGCGgCCAGGCcuccgcggGCgGCCCggCgCCGCUCc -3'
miRNA:   3'- -GCGUgGGUUUG--------CGgCGGGa-G-GGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 26765 0.67 0.620841
Target:  5'- gGCGCCCGccauguugaguAGCGCgGCCCagUagCGCUCu -3'
miRNA:   3'- gCGUGGGU-----------UUGCGgCGGGagG--GCGAG- -5'
2643 3' -61.6 NC_001491.2 + 136994 0.67 0.620841
Target:  5'- gGUGCCgcUAAACGCgagGCCCUUaCCGCUCu -3'
miRNA:   3'- gCGUGG--GUUUGCGg--CGGGAG-GGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 1570 0.67 0.620841
Target:  5'- gGC-CCC-AGCGCCGCgCCggCCGCa- -3'
miRNA:   3'- gCGuGGGuUUGCGGCG-GGagGGCGag -5'
2643 3' -61.6 NC_001491.2 + 26002 0.66 0.630727
Target:  5'- -uCAuCCCAGGCGgcguuuccccuaCCGCUCUccCCCGCUCg -3'
miRNA:   3'- gcGU-GGGUUUGC------------GGCGGGA--GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 24717 0.66 0.640614
Target:  5'- cCGcCGCCgcGACGCCGCCCcgccccggggaCCCGCg- -3'
miRNA:   3'- -GC-GUGGguUUGCGGCGGGa----------GGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.