miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26430 3' -62.8 NC_005345.2 + 47437 1.08 0.000218
Target:  5'- cGAGCGGUCGGUCGUCUCGCCGGCCCAa -3'
miRNA:   3'- -CUCGCCAGCCAGCAGAGCGGCCGGGU- -5'
26430 3' -62.8 NC_005345.2 + 5409 0.79 0.039743
Target:  5'- cGGCGGUCGGccgagCGUCUCGCCGaguucuucggcggcGCCCGg -3'
miRNA:   3'- cUCGCCAGCCa----GCAGAGCGGC--------------CGGGU- -5'
26430 3' -62.8 NC_005345.2 + 30140 0.72 0.122786
Target:  5'- aGGGCGGcgcgccacccgucgaGGUCGUCcCGCCGGCCa- -3'
miRNA:   3'- -CUCGCCag-------------CCAGCAGaGCGGCCGGgu -5'
26430 3' -62.8 NC_005345.2 + 2359 0.72 0.123776
Target:  5'- uGGCGGcgcagccCGGUCGcgacCUCGCgGGCCCAa -3'
miRNA:   3'- cUCGCCa------GCCAGCa---GAGCGgCCGGGU- -5'
26430 3' -62.8 NC_005345.2 + 883 0.71 0.137696
Target:  5'- -cGCGGUCGGgcggcaucaguUCGUCcggaugcuUCGCCGGCgCCu -3'
miRNA:   3'- cuCGCCAGCC-----------AGCAG--------AGCGGCCG-GGu -5'
26430 3' -62.8 NC_005345.2 + 37853 0.69 0.193349
Target:  5'- -uGCGGUCGGUCG-Cg-GCCGGCg-- -3'
miRNA:   3'- cuCGCCAGCCAGCaGagCGGCCGggu -5'
26430 3' -62.8 NC_005345.2 + 45904 0.69 0.214083
Target:  5'- cGGCGGaCGGUUGUCacUCGCCuGCCa- -3'
miRNA:   3'- cUCGCCaGCCAGCAG--AGCGGcCGGgu -5'
26430 3' -62.8 NC_005345.2 + 24557 0.69 0.219557
Target:  5'- cGAGCaGUCGcUCG--UCGCCGGCCUg -3'
miRNA:   3'- -CUCGcCAGCcAGCagAGCGGCCGGGu -5'
26430 3' -62.8 NC_005345.2 + 21197 0.69 0.219557
Target:  5'- -uGUGGUCGGgcuugUCGUCgUCGCCGGUgucguCCGu -3'
miRNA:   3'- cuCGCCAGCC-----AGCAG-AGCGGCCG-----GGU- -5'
26430 3' -62.8 NC_005345.2 + 27106 0.68 0.234935
Target:  5'- -cGCGGUCGGcUCGUgagCUCGgCCgggaccguccggcgGGCCCGg -3'
miRNA:   3'- cuCGCCAGCC-AGCA---GAGC-GG--------------CCGGGU- -5'
26430 3' -62.8 NC_005345.2 + 17275 0.68 0.236698
Target:  5'- -cGCGGUCcuGGUCugcgcgcggGUCUUGUCGGCCgGa -3'
miRNA:   3'- cuCGCCAG--CCAG---------CAGAGCGGCCGGgU- -5'
26430 3' -62.8 NC_005345.2 + 20569 0.68 0.242656
Target:  5'- -uGCGGUCGGUCacaUUC-CCGGgCCCAa -3'
miRNA:   3'- cuCGCCAGCCAGca-GAGcGGCC-GGGU- -5'
26430 3' -62.8 NC_005345.2 + 40063 0.68 0.248739
Target:  5'- -uGCGGgCGGUCGcCggcgaCGgCGGCCCGg -3'
miRNA:   3'- cuCGCCaGCCAGCaGa----GCgGCCGGGU- -5'
26430 3' -62.8 NC_005345.2 + 48363 0.68 0.254947
Target:  5'- aAGCGGgccCGGUCGgcaucccccgC-CGCCGGCCgGg -3'
miRNA:   3'- cUCGCCa--GCCAGCa---------GaGCGGCCGGgU- -5'
26430 3' -62.8 NC_005345.2 + 2777 0.67 0.267743
Target:  5'- cGGCGGccUCGGUaCGgCUUGUCGGCgCCGg -3'
miRNA:   3'- cUCGCC--AGCCA-GCaGAGCGGCCG-GGU- -5'
26430 3' -62.8 NC_005345.2 + 7958 0.67 0.267743
Target:  5'- cGGGCGGggaucccgUCGGUCGUCgUGUCGuGCCg- -3'
miRNA:   3'- -CUCGCC--------AGCCAGCAGaGCGGC-CGGgu -5'
26430 3' -62.8 NC_005345.2 + 43920 0.67 0.281053
Target:  5'- cAGCGcGUCGG-CGaUCagGCCGGCCgCGa -3'
miRNA:   3'- cUCGC-CAGCCaGC-AGagCGGCCGG-GU- -5'
26430 3' -62.8 NC_005345.2 + 5593 0.67 0.287903
Target:  5'- aGGCGGUCGG-CGagCUUGUCGGCg-- -3'
miRNA:   3'- cUCGCCAGCCaGCa-GAGCGGCCGggu -5'
26430 3' -62.8 NC_005345.2 + 18389 0.67 0.287903
Target:  5'- --cCGGUCGGUCGUCgUGCCcGGCg-- -3'
miRNA:   3'- cucGCCAGCCAGCAGaGCGG-CCGggu -5'
26430 3' -62.8 NC_005345.2 + 18708 0.67 0.301995
Target:  5'- -cGCGGUCGGcgUCGUCaUCGCaUGGCg-- -3'
miRNA:   3'- cuCGCCAGCC--AGCAG-AGCG-GCCGggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.