Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 29435 | 0.66 | 0.309238 |
Target: 5'- -uGCGGgcgucguccUCGG-CGUCgaggcgguacUCGUCGGCCCGg -3' miRNA: 3'- cuCGCC---------AGCCaGCAG----------AGCGGCCGGGU- -5' |
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26430 | 3' | -62.8 | NC_005345.2 | + | 46407 | 0.66 | 0.316613 |
Target: 5'- aGGCGGcacuugUCGaccGcCGUCUCGCCGcGUCCAg -3' miRNA: 3'- cUCGCC------AGC---CaGCAGAGCGGC-CGGGU- -5' |
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26430 | 3' | -62.8 | NC_005345.2 | + | 24645 | 0.66 | 0.323362 |
Target: 5'- -cGCGGU-GGUCGaccaggaUCcCGCgGGCCCGg -3' miRNA: 3'- cuCGCCAgCCAGC-------AGaGCGgCCGGGU- -5' |
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26430 | 3' | -62.8 | NC_005345.2 | + | 9927 | 0.66 | 0.323362 |
Target: 5'- gGGGCaGUCGG-CGUCggcccgacggUCGCCaacccgcGGCCCGg -3' miRNA: 3'- -CUCGcCAGCCaGCAG----------AGCGG-------CCGGGU- -5' |
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26430 | 3' | -62.8 | NC_005345.2 | + | 4119 | 0.66 | 0.324119 |
Target: 5'- cGAGCGGUUGG-CGUucgagcggcugCUCGCgGcGCUCGu -3' miRNA: 3'- -CUCGCCAGCCaGCA-----------GAGCGgC-CGGGU- -5' |
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26430 | 3' | -62.8 | NC_005345.2 | + | 35867 | 0.66 | 0.338744 |
Target: 5'- cGGgGGUCGGgggCGUCgUCGCCGacgagcuGCUCGc -3' miRNA: 3'- cUCgCCAGCCa--GCAG-AGCGGC-------CGGGU- -5' |
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26430 | 3' | -62.8 | NC_005345.2 | + | 43056 | 0.66 | 0.338744 |
Target: 5'- -cGCGGugccggcUCGGUCGUgUCGUCGGgCa- -3' miRNA: 3'- cuCGCC-------AGCCAGCAgAGCGGCCgGgu -5' |
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26430 | 3' | -62.8 | NC_005345.2 | + | 8438 | 0.66 | 0.347427 |
Target: 5'- cGAGCGGUCGGUguggaCGgacggCaCCGGCCaCAc -3' miRNA: 3'- -CUCGCCAGCCA-----GCaga--GcGGCCGG-GU- -5' |
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26430 | 3' | -62.8 | NC_005345.2 | + | 19385 | 0.66 | 0.347427 |
Target: 5'- cGGCGGUCGuGccgagcagCGUCgCGCCGaGCUCGg -3' miRNA: 3'- cUCGCCAGC-Ca-------GCAGaGCGGC-CGGGU- -5' |
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26430 | 3' | -62.8 | NC_005345.2 | + | 28163 | 0.66 | 0.347427 |
Target: 5'- --cCGGUCGG-CGUucCUCGCCGcGgCCAa -3' miRNA: 3'- cucGCCAGCCaGCA--GAGCGGC-CgGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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