miRNA display CGI

Results 21 - 30 of 30 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
26430	3'	-62.8	NC_005345.2	+	27106	0.68	0.234935
	Target:  5'- -cGCGGUCGGcUCGUgagCUCGgCCgggaccguccggcgGGCCCGg -3' miRNA:   3'- cuCGCCAGCC-AGCA---GAGC-GG--------------CCGGGU- -5'
26430	3'	-62.8	NC_005345.2	+	21197	0.69	0.219557
	Target:  5'- -uGUGGUCGGgcuugUCGUCgUCGCCGGUgucguCCGu -3' miRNA:   3'- cuCGCCAGCC-----AGCAG-AGCGGCCG-----GGU- -5'
26430	3'	-62.8	NC_005345.2	+	24557	0.69	0.219557
	Target:  5'- cGAGCaGUCGcUCG--UCGCCGGCCUg -3' miRNA:   3'- -CUCGcCAGCcAGCagAGCGGCCGGGu -5'
26430	3'	-62.8	NC_005345.2	+	45904	0.69	0.214083
	Target:  5'- cGGCGGaCGGUUGUCacUCGCCuGCCa- -3' miRNA:   3'- cUCGCCaGCCAGCAG--AGCGGcCGGgu -5'
26430	3'	-62.8	NC_005345.2	+	37853	0.69	0.193349
	Target:  5'- -uGCGGUCGGUCG-Cg-GCCGGCg-- -3' miRNA:   3'- cuCGCCAGCCAGCaGagCGGCCGggu -5'
26430	3'	-62.8	NC_005345.2	+	883	0.71	0.137696
	Target:  5'- -cGCGGUCGGgcggcaucaguUCGUCcggaugcuUCGCCGGCgCCu -3' miRNA:   3'- cuCGCCAGCC-----------AGCAG--------AGCGGCCG-GGu -5'
26430	3'	-62.8	NC_005345.2	+	2359	0.72	0.123776
	Target:  5'- uGGCGGcgcagccCGGUCGcgacCUCGCgGGCCCAa -3' miRNA:   3'- cUCGCCa------GCCAGCa---GAGCGgCCGGGU- -5'
26430	3'	-62.8	NC_005345.2	+	30140	0.72	0.122786
	Target:  5'- aGGGCGGcgcgccacccgucgaGGUCGUCcCGCCGGCCa- -3' miRNA:   3'- -CUCGCCag-------------CCAGCAGaGCGGCCGGgu -5'
26430	3'	-62.8	NC_005345.2	+	5409	0.79	0.039743
	Target:  5'- cGGCGGUCGGccgagCGUCUCGCCGaguucuucggcggcGCCCGg -3' miRNA:   3'- cUCGCCAGCCa----GCAGAGCGGC--------------CGGGU- -5'
26430	3'	-62.8	NC_005345.2	+	47437	1.08	0.000218
	Target:  5'- cGAGCGGUCGGUCGUCUCGCCGGCCCAa -3' miRNA:   3'- -CUCGCCAGCCAGCAGAGCGGCCGGGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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