Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 883 | 0.71 | 0.137696 |
Target: 5'- -cGCGGUCGGgcggcaucaguUCGUCcggaugcuUCGCCGGCgCCu -3' miRNA: 3'- cuCGCCAGCC-----------AGCAG--------AGCGGCCG-GGu -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 2359 | 0.72 | 0.123776 |
Target: 5'- uGGCGGcgcagccCGGUCGcgacCUCGCgGGCCCAa -3' miRNA: 3'- cUCGCCa------GCCAGCa---GAGCGgCCGGGU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 2777 | 0.67 | 0.267743 |
Target: 5'- cGGCGGccUCGGUaCGgCUUGUCGGCgCCGg -3' miRNA: 3'- cUCGCC--AGCCA-GCaGAGCGGCCG-GGU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 4119 | 0.66 | 0.324119 |
Target: 5'- cGAGCGGUUGG-CGUucgagcggcugCUCGCgGcGCUCGu -3' miRNA: 3'- -CUCGCCAGCCaGCA-----------GAGCGgC-CGGGU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 5409 | 0.79 | 0.039743 |
Target: 5'- cGGCGGUCGGccgagCGUCUCGCCGaguucuucggcggcGCCCGg -3' miRNA: 3'- cUCGCCAGCCa----GCAGAGCGGC--------------CGGGU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 5593 | 0.67 | 0.287903 |
Target: 5'- aGGCGGUCGG-CGagCUUGUCGGCg-- -3' miRNA: 3'- cUCGCCAGCCaGCa-GAGCGGCCGggu -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 7958 | 0.67 | 0.267743 |
Target: 5'- cGGGCGGggaucccgUCGGUCGUCgUGUCGuGCCg- -3' miRNA: 3'- -CUCGCC--------AGCCAGCAGaGCGGC-CGGgu -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 8438 | 0.66 | 0.347427 |
Target: 5'- cGAGCGGUCGGUguggaCGgacggCaCCGGCCaCAc -3' miRNA: 3'- -CUCGCCAGCCA-----GCaga--GcGGCCGG-GU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 9927 | 0.66 | 0.323362 |
Target: 5'- gGGGCaGUCGG-CGUCggcccgacggUCGCCaacccgcGGCCCGg -3' miRNA: 3'- -CUCGcCAGCCaGCAG----------AGCGG-------CCGGGU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 17275 | 0.68 | 0.236698 |
Target: 5'- -cGCGGUCcuGGUCugcgcgcggGUCUUGUCGGCCgGa -3' miRNA: 3'- cuCGCCAG--CCAG---------CAGAGCGGCCGGgU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 18389 | 0.67 | 0.287903 |
Target: 5'- --cCGGUCGGUCGUCgUGCCcGGCg-- -3' miRNA: 3'- cucGCCAGCCAGCAGaGCGG-CCGggu -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 18708 | 0.67 | 0.301995 |
Target: 5'- -cGCGGUCGGcgUCGUCaUCGCaUGGCg-- -3' miRNA: 3'- cuCGCCAGCC--AGCAG-AGCG-GCCGggu -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 19385 | 0.66 | 0.347427 |
Target: 5'- cGGCGGUCGuGccgagcagCGUCgCGCCGaGCUCGg -3' miRNA: 3'- cUCGCCAGC-Ca-------GCAGaGCGGC-CGGGU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 20569 | 0.68 | 0.242656 |
Target: 5'- -uGCGGUCGGUCacaUUC-CCGGgCCCAa -3' miRNA: 3'- cuCGCCAGCCAGca-GAGcGGCC-GGGU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 21197 | 0.69 | 0.219557 |
Target: 5'- -uGUGGUCGGgcuugUCGUCgUCGCCGGUgucguCCGu -3' miRNA: 3'- cuCGCCAGCC-----AGCAG-AGCGGCCG-----GGU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 24557 | 0.69 | 0.219557 |
Target: 5'- cGAGCaGUCGcUCG--UCGCCGGCCUg -3' miRNA: 3'- -CUCGcCAGCcAGCagAGCGGCCGGGu -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 24645 | 0.66 | 0.323362 |
Target: 5'- -cGCGGU-GGUCGaccaggaUCcCGCgGGCCCGg -3' miRNA: 3'- cuCGCCAgCCAGC-------AGaGCGgCCGGGU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 27106 | 0.68 | 0.234935 |
Target: 5'- -cGCGGUCGGcUCGUgagCUCGgCCgggaccguccggcgGGCCCGg -3' miRNA: 3'- cuCGCCAGCC-AGCA---GAGC-GG--------------CCGGGU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 28163 | 0.66 | 0.347427 |
Target: 5'- --cCGGUCGG-CGUucCUCGCCGcGgCCAa -3' miRNA: 3'- cucGCCAGCCaGCA--GAGCGGC-CgGGU- -5' |
|||||||
26430 | 3' | -62.8 | NC_005345.2 | + | 29435 | 0.66 | 0.309238 |
Target: 5'- -uGCGGgcgucguccUCGG-CGUCgaggcgguacUCGUCGGCCCGg -3' miRNA: 3'- cuCGCC---------AGCCaGCAG----------AGCGGCCGGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home