Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26430 | 5' | -58.4 | NC_005345.2 | + | 47477 | 1.07 | 0.000487 |
Target: 5'- cUGUGGGCGAUGCAGCACAGCGGACGUa -3' miRNA: 3'- -ACACCCGCUACGUCGUGUCGCCUGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 5255 | 0.79 | 0.070671 |
Target: 5'- gGUGGGCGugacggGCGGCAgGGCGGGCu- -3' miRNA: 3'- aCACCCGCua----CGUCGUgUCGCCUGca -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 20632 | 0.77 | 0.091427 |
Target: 5'- --gGGGCGAUcgAGCGCAGCGGAUGg -3' miRNA: 3'- acaCCCGCUAcgUCGUGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 14923 | 0.76 | 0.117881 |
Target: 5'- --cGcGGCGcgGCGGCuGCAGCGGGCGg -3' miRNA: 3'- acaC-CCGCuaCGUCG-UGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 7516 | 0.75 | 0.13551 |
Target: 5'- gGUGGGCG-UGCuGCcgGCGGCGGuCGUg -3' miRNA: 3'- aCACCCGCuACGuCG--UGUCGCCuGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 6538 | 0.72 | 0.203758 |
Target: 5'- --gGGGCGggGCGGgGCGGUgggGGACGUg -3' miRNA: 3'- acaCCCGCuaCGUCgUGUCG---CCUGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 10857 | 0.72 | 0.203758 |
Target: 5'- gGUGGGCGGacUGCcGCAC-GCGGcGCGUc -3' miRNA: 3'- aCACCCGCU--ACGuCGUGuCGCC-UGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 19900 | 0.72 | 0.209236 |
Target: 5'- --cGGGCGAgccGCuGCGCAucGCGGGCGa -3' miRNA: 3'- acaCCCGCUa--CGuCGUGU--CGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 36784 | 0.71 | 0.23243 |
Target: 5'- cGUcGGCGAUcggcacagccGCAGCGCAGCuGACGa -3' miRNA: 3'- aCAcCCGCUA----------CGUCGUGUCGcCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 14888 | 0.71 | 0.23243 |
Target: 5'- aGUcGGGcCGAgGCGGaGCAGCGGGCGa -3' miRNA: 3'- aCA-CCC-GCUaCGUCgUGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 15861 | 0.71 | 0.244819 |
Target: 5'- gGUGGGCGA-GCAGCuCGGCGcuUGUg -3' miRNA: 3'- aCACCCGCUaCGUCGuGUCGCcuGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 35332 | 0.71 | 0.251217 |
Target: 5'- --cGGGCGAU-CGGCGCGGcCGGcGCGUg -3' miRNA: 3'- acaCCCGCUAcGUCGUGUC-GCC-UGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 1360 | 0.71 | 0.251217 |
Target: 5'- aGUGGGuUGAUGUccgcGUACAGCGGuCGUc -3' miRNA: 3'- aCACCC-GCUACGu---CGUGUCGCCuGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 3054 | 0.7 | 0.264425 |
Target: 5'- --gGGGCGGUGUGGaCGUAGCGGAuCGUg -3' miRNA: 3'- acaCCCGCUACGUC-GUGUCGCCU-GCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 39055 | 0.7 | 0.285284 |
Target: 5'- gGUGGGCGcuacgcagGCGGCGaucgAGUGGACGc -3' miRNA: 3'- aCACCCGCua------CGUCGUg---UCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 7351 | 0.7 | 0.292521 |
Target: 5'- gUGUGGccCGcgGUGGCGCAGCcGGGCGg -3' miRNA: 3'- -ACACCc-GCuaCGUCGUGUCG-CCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 12709 | 0.7 | 0.292521 |
Target: 5'- gGUGGGCGAUGCAGC-CcGUGuuCGc -3' miRNA: 3'- aCACCCGCUACGUCGuGuCGCcuGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 28922 | 0.69 | 0.322108 |
Target: 5'- cGUGccacgcaGGCGAUGC-GCGCGGCGGGu-- -3' miRNA: 3'- aCAC-------CCGCUACGuCGUGUCGCCUgca -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 45272 | 0.69 | 0.330848 |
Target: 5'- cGUcGGCGGagaGCAGCGCAG-GGACGc -3' miRNA: 3'- aCAcCCGCUa--CGUCGUGUCgCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 31310 | 0.69 | 0.338128 |
Target: 5'- --cGGGCGcUGCuGCGCGGUcuggagggcggccGGACGUg -3' miRNA: 3'- acaCCCGCuACGuCGUGUCG-------------CCUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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