Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26430 | 5' | -58.4 | NC_005345.2 | + | 1360 | 0.71 | 0.251217 |
Target: 5'- aGUGGGuUGAUGUccgcGUACAGCGGuCGUc -3' miRNA: 3'- aCACCC-GCUACGu---CGUGUCGCCuGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 3054 | 0.7 | 0.264425 |
Target: 5'- --gGGGCGGUGUGGaCGUAGCGGAuCGUg -3' miRNA: 3'- acaCCCGCUACGUC-GUGUCGCCU-GCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 3409 | 0.69 | 0.346352 |
Target: 5'- --cGGGCuGAgagagGCGGCgggcgcgGCGGCGGGCGg -3' miRNA: 3'- acaCCCG-CUa----CGUCG-------UGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 5255 | 0.79 | 0.070671 |
Target: 5'- gGUGGGCGugacggGCGGCAgGGCGGGCu- -3' miRNA: 3'- aCACCCGCua----CGUCGUgUCGCCUGca -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 6538 | 0.72 | 0.203758 |
Target: 5'- --gGGGCGggGCGGgGCGGUgggGGACGUg -3' miRNA: 3'- acaCCCGCuaCGUCgUGUCG---CCUGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 6705 | 0.67 | 0.437174 |
Target: 5'- gGUGGcaCGA-GCAGC-CGGCGGGCa- -3' miRNA: 3'- aCACCc-GCUaCGUCGuGUCGCCUGca -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 6787 | 0.67 | 0.424725 |
Target: 5'- cGUGuGGCGGcUGgAGUcgcacaguugguauGCGGCGGACGc -3' miRNA: 3'- aCAC-CCGCU-ACgUCG--------------UGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 7351 | 0.7 | 0.292521 |
Target: 5'- gUGUGGccCGcgGUGGCGCAGCcGGGCGg -3' miRNA: 3'- -ACACCc-GCuaCGUCGUGUCG-CCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 7516 | 0.75 | 0.13551 |
Target: 5'- gGUGGGCG-UGCuGCcgGCGGCGGuCGUg -3' miRNA: 3'- aCACCCGCuACGuCG--UGUCGCCuGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 10097 | 0.68 | 0.355563 |
Target: 5'- --cGGGcCGA-GCGGCACAuGCGcGACGa -3' miRNA: 3'- acaCCC-GCUaCGUCGUGU-CGC-CUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 10156 | 0.67 | 0.437174 |
Target: 5'- gGUGGG-GAUG-GGCGCAGaCGcGACGg -3' miRNA: 3'- aCACCCgCUACgUCGUGUC-GC-CUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 10857 | 0.72 | 0.203758 |
Target: 5'- gGUGGGCGGacUGCcGCAC-GCGGcGCGUc -3' miRNA: 3'- aCACCCGCU--ACGuCGUGuCGCC-UGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 12709 | 0.7 | 0.292521 |
Target: 5'- gGUGGGCGAUGCAGC-CcGUGuuCGc -3' miRNA: 3'- aCACCCGCUACGUCGuGuCGCcuGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 14828 | 0.66 | 0.507542 |
Target: 5'- gUGUGGuCGAcgcccgaGCAGCuugccgggcuGCAGCGGGCGc -3' miRNA: 3'- -ACACCcGCUa------CGUCG----------UGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 14888 | 0.71 | 0.23243 |
Target: 5'- aGUcGGGcCGAgGCGGaGCAGCGGGCGa -3' miRNA: 3'- aCA-CCC-GCUaCGUCgUGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 14923 | 0.76 | 0.117881 |
Target: 5'- --cGcGGCGcgGCGGCuGCAGCGGGCGg -3' miRNA: 3'- acaC-CCGCuaCGUCG-UGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 15861 | 0.71 | 0.244819 |
Target: 5'- gGUGGGCGA-GCAGCuCGGCGcuUGUg -3' miRNA: 3'- aCACCCGCUaCGUCGuGUCGCcuGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 19900 | 0.72 | 0.209236 |
Target: 5'- --cGGGCGAgccGCuGCGCAucGCGGGCGa -3' miRNA: 3'- acaCCCGCUa--CGuCGUGU--CGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 20383 | 0.66 | 0.476738 |
Target: 5'- --cGGGuCGAUGguGUugAccGCGGGCGc -3' miRNA: 3'- acaCCC-GCUACguCGugU--CGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 20632 | 0.77 | 0.091427 |
Target: 5'- --gGGGCGAUcgAGCGCAGCGGAUGg -3' miRNA: 3'- acaCCCGCUAcgUCGUGUCGCCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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