miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26430 5' -58.4 NC_005345.2 + 47477 1.07 0.000487
Target:  5'- cUGUGGGCGAUGCAGCACAGCGGACGUa -3'
miRNA:   3'- -ACACCCGCUACGUCGUGUCGCCUGCA- -5'
26430 5' -58.4 NC_005345.2 + 34411 0.66 0.476738
Target:  5'- gGUGGGCGgcGCcGCGgAcCGGAUGg -3'
miRNA:   3'- aCACCCGCuaCGuCGUgUcGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 14828 0.66 0.507542
Target:  5'- gUGUGGuCGAcgcccgaGCAGCuugccgggcuGCAGCGGGCGc -3'
miRNA:   3'- -ACACCcGCUa------CGUCG----------UGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 30517 0.66 0.507542
Target:  5'- --cGGGCGG-GUAccgGCAGCGGACGa -3'
miRNA:   3'- acaCCCGCUaCGUcg-UGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 14888 0.71 0.23243
Target:  5'- aGUcGGGcCGAgGCGGaGCAGCGGGCGa -3'
miRNA:   3'- aCA-CCC-GCUaCGUCgUGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 36784 0.71 0.23243
Target:  5'- cGUcGGCGAUcggcacagccGCAGCGCAGCuGACGa -3'
miRNA:   3'- aCAcCCGCUA----------CGUCGUGUCGcCUGCa -5'
26430 5' -58.4 NC_005345.2 + 39055 0.7 0.285284
Target:  5'- gGUGGGCGcuacgcagGCGGCGaucgAGUGGACGc -3'
miRNA:   3'- aCACCCGCua------CGUCGUg---UCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 7351 0.7 0.292521
Target:  5'- gUGUGGccCGcgGUGGCGCAGCcGGGCGg -3'
miRNA:   3'- -ACACCc-GCuaCGUCGUGUCG-CCUGCa -5'
26430 5' -58.4 NC_005345.2 + 10097 0.68 0.355563
Target:  5'- --cGGGcCGA-GCGGCACAuGCGcGACGa -3'
miRNA:   3'- acaCCC-GCUaCGUCGUGU-CGC-CUGCa -5'
26430 5' -58.4 NC_005345.2 + 22250 0.66 0.475727
Target:  5'- cGacGGCGAggUGCugccgugGGCGCAGCGGAuCGUc -3'
miRNA:   3'- aCacCCGCU--ACG-------UCGUGUCGCCU-GCA- -5'
26430 5' -58.4 NC_005345.2 + 6787 0.67 0.424725
Target:  5'- cGUGuGGCGGcUGgAGUcgcacaguugguauGCGGCGGACGc -3'
miRNA:   3'- aCAC-CCGCU-ACgUCG--------------UGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 31310 0.69 0.338128
Target:  5'- --cGGGCGcUGCuGCGCGGUcuggagggcggccGGACGUg -3'
miRNA:   3'- acaCCCGCuACGuCGUGUCG-------------CCUGCA- -5'
26430 5' -58.4 NC_005345.2 + 20632 0.77 0.091427
Target:  5'- --gGGGCGAUcgAGCGCAGCGGAUGg -3'
miRNA:   3'- acaCCCGCUAcgUCGUGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 48558 0.67 0.426627
Target:  5'- aUGcGGGCgucgcgGAUGCGGgcgccgaugagcuCGCGGCGGGCGa -3'
miRNA:   3'- -ACaCCCG------CUACGUC-------------GUGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 14923 0.76 0.117881
Target:  5'- --cGcGGCGcgGCGGCuGCAGCGGGCGg -3'
miRNA:   3'- acaC-CCGCuaCGUCG-UGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 12709 0.7 0.292521
Target:  5'- gGUGGGCGAUGCAGC-CcGUGuuCGc -3'
miRNA:   3'- aCACCCGCUACGUCGuGuCGCcuGCa -5'
26430 5' -58.4 NC_005345.2 + 6705 0.67 0.437174
Target:  5'- gGUGGcaCGA-GCAGC-CGGCGGGCa- -3'
miRNA:   3'- aCACCc-GCUaCGUCGuGUCGCCUGca -5'
26430 5' -58.4 NC_005345.2 + 22690 0.66 0.476738
Target:  5'- cGU-GGCGGUGaAGCGgGGCGG-CGUg -3'
miRNA:   3'- aCAcCCGCUACgUCGUgUCGCCuGCA- -5'
26430 5' -58.4 NC_005345.2 + 10857 0.72 0.203758
Target:  5'- gGUGGGCGGacUGCcGCAC-GCGGcGCGUc -3'
miRNA:   3'- aCACCCGCU--ACGuCGUGuCGCC-UGCA- -5'
26430 5' -58.4 NC_005345.2 + 35332 0.71 0.251217
Target:  5'- --cGGGCGAU-CGGCGCGGcCGGcGCGUg -3'
miRNA:   3'- acaCCCGCUAcGUCGUGUC-GCC-UGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.