Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26430 | 5' | -58.4 | NC_005345.2 | + | 1360 | 0.71 | 0.251217 |
Target: 5'- aGUGGGuUGAUGUccgcGUACAGCGGuCGUc -3' miRNA: 3'- aCACCC-GCUACGu---CGUGUCGCCuGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 25636 | 0.68 | 0.372747 |
Target: 5'- --aGGGCGGUGUcgAGCAggaacugcCAGuCGGACGa -3' miRNA: 3'- acaCCCGCUACG--UCGU--------GUC-GCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 33371 | 0.68 | 0.372747 |
Target: 5'- gGUGGGgGcgGUGGCGCGGCcccGGAUa- -3' miRNA: 3'- aCACCCgCuaCGUCGUGUCG---CCUGca -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 34920 | 0.68 | 0.355563 |
Target: 5'- --aGGGCGugcGCAGgGCGGCGG-CGa -3' miRNA: 3'- acaCCCGCua-CGUCgUGUCGCCuGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 35830 | 0.69 | 0.347182 |
Target: 5'- cUGUcGGGCGAg--GGCGCGGCGGGUGg -3' miRNA: 3'- -ACA-CCCGCUacgUCGUGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 3409 | 0.69 | 0.346352 |
Target: 5'- --cGGGCuGAgagagGCGGCgggcgcgGCGGCGGGCGg -3' miRNA: 3'- acaCCCG-CUa----CGUCG-------UGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 45272 | 0.69 | 0.330848 |
Target: 5'- cGUcGGCGGagaGCAGCGCAG-GGACGc -3' miRNA: 3'- aCAcCCGCUa--CGUCGUGUCgCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 28922 | 0.69 | 0.322108 |
Target: 5'- cGUGccacgcaGGCGAUGC-GCGCGGCGGGu-- -3' miRNA: 3'- aCAC-------CCGCUACGuCGUGUCGCCUgca -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 3054 | 0.7 | 0.264425 |
Target: 5'- --gGGGCGGUGUGGaCGUAGCGGAuCGUg -3' miRNA: 3'- acaCCCGCUACGUC-GUGUCGCCU-GCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 31476 | 0.68 | 0.381549 |
Target: 5'- gUGUGaGGCGG-GCgAGCGCGGCGuaGGCGc -3' miRNA: 3'- -ACAC-CCGCUaCG-UCGUGUCGC--CUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 35104 | 0.67 | 0.399563 |
Target: 5'- gGUGGuGCGGgcgugGCGGguguuguuCAUGGCGGGCGUu -3' miRNA: 3'- aCACC-CGCUa----CGUC--------GUGUCGCCUGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 31192 | 0.67 | 0.399563 |
Target: 5'- --cGGGCGcgGCgGGUGCGGCGGguGCGc -3' miRNA: 3'- acaCCCGCuaCG-UCGUGUCGCC--UGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 45863 | 0.66 | 0.487929 |
Target: 5'- cGUGGGggcggggagccCGAcGCcgucgaucacggucuGCACGGCGGACGg -3' miRNA: 3'- aCACCC-----------GCUaCGu--------------CGUGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 38197 | 0.66 | 0.486906 |
Target: 5'- --cGGGCGuaggGCGGCGgCGGgaaCGGACGg -3' miRNA: 3'- acaCCCGCua--CGUCGU-GUC---GCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 43449 | 0.66 | 0.486906 |
Target: 5'- uUGUGgcgagggacggcGGCGAguucGCGGCGCAGCGcGGuCGg -3' miRNA: 3'- -ACAC------------CCGCUa---CGUCGUGUCGC-CU-GCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 34611 | 0.66 | 0.476738 |
Target: 5'- --cGGGCGAggaGcCAGCguGCGGCGGuCGg -3' miRNA: 3'- acaCCCGCUa--C-GUCG--UGUCGCCuGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 20383 | 0.66 | 0.476738 |
Target: 5'- --cGGGuCGAUGguGUugAccGCGGGCGc -3' miRNA: 3'- acaCCC-GCUACguCGugU--CGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 30891 | 0.67 | 0.44689 |
Target: 5'- --cGGGCGA--CGGCGCGGCcGGCGa -3' miRNA: 3'- acaCCCGCUacGUCGUGUCGcCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 10156 | 0.67 | 0.437174 |
Target: 5'- gGUGGG-GAUG-GGCGCAGaCGcGACGg -3' miRNA: 3'- aCACCCgCUACgUCGUGUC-GC-CUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 36321 | 0.67 | 0.408771 |
Target: 5'- cGccGGUGAUGCGGCGCaggcgaaccGGCGGGCc- -3' miRNA: 3'- aCacCCGCUACGUCGUG---------UCGCCUGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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