miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26430 5' -58.4 NC_005345.2 + 48558 0.67 0.426627
Target:  5'- aUGcGGGCgucgcgGAUGCGGgcgccgaugagcuCGCGGCGGGCGa -3'
miRNA:   3'- -ACaCCCG------CUACGUC-------------GUGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 47477 1.07 0.000487
Target:  5'- cUGUGGGCGAUGCAGCACAGCGGACGUa -3'
miRNA:   3'- -ACACCCGCUACGUCGUGUCGCCUGCA- -5'
26430 5' -58.4 NC_005345.2 + 45863 0.66 0.487929
Target:  5'- cGUGGGggcggggagccCGAcGCcgucgaucacggucuGCACGGCGGACGg -3'
miRNA:   3'- aCACCC-----------GCUaCGu--------------CGUGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 45272 0.69 0.330848
Target:  5'- cGUcGGCGGagaGCAGCGCAG-GGACGc -3'
miRNA:   3'- aCAcCCGCUa--CGUCGUGUCgCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 43449 0.66 0.486906
Target:  5'- uUGUGgcgagggacggcGGCGAguucGCGGCGCAGCGcGGuCGg -3'
miRNA:   3'- -ACAC------------CCGCUa---CGUCGUGUCGC-CU-GCa -5'
26430 5' -58.4 NC_005345.2 + 40871 0.66 0.497176
Target:  5'- --aGGGCGGccGCuucgaccgGGCACAugcuGCGGACGUu -3'
miRNA:   3'- acaCCCGCUa-CG--------UCGUGU----CGCCUGCA- -5'
26430 5' -58.4 NC_005345.2 + 39055 0.7 0.285284
Target:  5'- gGUGGGCGcuacgcagGCGGCGaucgAGUGGACGc -3'
miRNA:   3'- aCACCCGCua------CGUCGUg---UCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 38197 0.66 0.486906
Target:  5'- --cGGGCGuaggGCGGCGgCGGgaaCGGACGg -3'
miRNA:   3'- acaCCCGCua--CGUCGU-GUC---GCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 36784 0.71 0.23243
Target:  5'- cGUcGGCGAUcggcacagccGCAGCGCAGCuGACGa -3'
miRNA:   3'- aCAcCCGCUA----------CGUCGUGUCGcCUGCa -5'
26430 5' -58.4 NC_005345.2 + 36321 0.67 0.408771
Target:  5'- cGccGGUGAUGCGGCGCaggcgaaccGGCGGGCc- -3'
miRNA:   3'- aCacCCGCUACGUCGUG---------UCGCCUGca -5'
26430 5' -58.4 NC_005345.2 + 35830 0.69 0.347182
Target:  5'- cUGUcGGGCGAg--GGCGCGGCGGGUGg -3'
miRNA:   3'- -ACA-CCCGCUacgUCGUGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 35332 0.71 0.251217
Target:  5'- --cGGGCGAU-CGGCGCGGcCGGcGCGUg -3'
miRNA:   3'- acaCCCGCUAcGUCGUGUC-GCC-UGCA- -5'
26430 5' -58.4 NC_005345.2 + 35104 0.67 0.399563
Target:  5'- gGUGGuGCGGgcgugGCGGguguuguuCAUGGCGGGCGUu -3'
miRNA:   3'- aCACC-CGCUa----CGUC--------GUGUCGCCUGCA- -5'
26430 5' -58.4 NC_005345.2 + 34920 0.68 0.355563
Target:  5'- --aGGGCGugcGCAGgGCGGCGG-CGa -3'
miRNA:   3'- acaCCCGCua-CGUCgUGUCGCCuGCa -5'
26430 5' -58.4 NC_005345.2 + 34611 0.66 0.476738
Target:  5'- --cGGGCGAggaGcCAGCguGCGGCGGuCGg -3'
miRNA:   3'- acaCCCGCUa--C-GUCG--UGUCGCCuGCa -5'
26430 5' -58.4 NC_005345.2 + 34411 0.66 0.476738
Target:  5'- gGUGGGCGgcGCcGCGgAcCGGAUGg -3'
miRNA:   3'- aCACCCGCuaCGuCGUgUcGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 33884 0.66 0.507542
Target:  5'- cGUGGGgGAcGCcgcucGCGCGGcCGGGCa- -3'
miRNA:   3'- aCACCCgCUaCGu----CGUGUC-GCCUGca -5'
26430 5' -58.4 NC_005345.2 + 33371 0.68 0.372747
Target:  5'- gGUGGGgGcgGUGGCGCGGCcccGGAUa- -3'
miRNA:   3'- aCACCCgCuaCGUCGUGUCG---CCUGca -5'
26430 5' -58.4 NC_005345.2 + 31476 0.68 0.381549
Target:  5'- gUGUGaGGCGG-GCgAGCGCGGCGuaGGCGc -3'
miRNA:   3'- -ACAC-CCGCUaCG-UCGUGUCGC--CUGCa -5'
26430 5' -58.4 NC_005345.2 + 31310 0.69 0.338128
Target:  5'- --cGGGCGcUGCuGCGCGGUcuggagggcggccGGACGUg -3'
miRNA:   3'- acaCCCGCuACGuCGUGUCG-------------CCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.