Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26431 | 5' | -60.6 | NC_005345.2 | + | 48343 | 1.1 | 0.000252 |
Target: 5'- gCCCCCGGGCGAGCAGGUGUAAGCGGGc -3' miRNA: 3'- -GGGGGCCCGCUCGUCCACAUUCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 6514 | 0.8 | 0.050188 |
Target: 5'- aCCCCGGGCcggacggcacgGGGCGGGgcgGGGCGGGg -3' miRNA: 3'- gGGGGCCCG-----------CUCGUCCacaUUCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 31219 | 0.77 | 0.076201 |
Target: 5'- -aCCCGGGUGcGGcCGGGUGUAcGGCGGGu -3' miRNA: 3'- ggGGGCCCGC-UC-GUCCACAU-UCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 4359 | 0.77 | 0.078334 |
Target: 5'- gCCUCGGGCGGGCGGGccgcucGGUGGGg -3' miRNA: 3'- gGGGGCCCGCUCGUCCacau--UCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 31189 | 0.76 | 0.089886 |
Target: 5'- -aCUCGGGCGcGGCGGGUGc-GGCGGGu -3' miRNA: 3'- ggGGGCCCGC-UCGUCCACauUCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 31264 | 0.76 | 0.103044 |
Target: 5'- -aCUCGGGUGcGCGGGUGcggGGGCGGGu -3' miRNA: 3'- ggGGGCCCGCuCGUCCACa--UUCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 31462 | 0.75 | 0.121225 |
Target: 5'- gCgCCGGG-GuGCGGGUGUGAgGCGGGc -3' miRNA: 3'- gGgGGCCCgCuCGUCCACAUU-CGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 5548 | 0.74 | 0.131397 |
Target: 5'- gCCCCuuuCGGGuCGGuguGCGGGUGggAGGCGGGu -3' miRNA: 3'- -GGGG---GCCC-GCU---CGUCCACa-UUCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 15339 | 0.73 | 0.166797 |
Target: 5'- -gCCgGGGCGuAGCGGGUGUGcggcgaaguaGGCGGc -3' miRNA: 3'- ggGGgCCCGC-UCGUCCACAU----------UCGCCc -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 35108 | 0.72 | 0.175748 |
Target: 5'- -gUgCGGGCGuGGCGGGUGUuguucauGGCGGGc -3' miRNA: 3'- ggGgGCCCGC-UCGUCCACAu------UCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 37567 | 0.72 | 0.19494 |
Target: 5'- gCCCgaggCGGGCGcaGGCGGGcUGcAGGCGGGc -3' miRNA: 3'- gGGG----GCCCGC--UCGUCC-ACaUUCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 35820 | 0.71 | 0.202079 |
Target: 5'- gUCCCUucuucugucgggcgaGGGCGcGGCGGGUGgcucgguucGGGCGGGg -3' miRNA: 3'- -GGGGG---------------CCCGC-UCGUCCACa--------UUCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 9328 | 0.71 | 0.204684 |
Target: 5'- -aCCCGGGCGGcgaccagugcgacGCAuGGUGgcuGCGGGc -3' miRNA: 3'- ggGGGCCCGCU-------------CGU-CCACauuCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 38185 | 0.71 | 0.205208 |
Target: 5'- gCCCguCCGGGaCGGGCguaGGGcGgcGGCGGGa -3' miRNA: 3'- -GGG--GGCCC-GCUCG---UCCaCauUCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 8938 | 0.71 | 0.21594 |
Target: 5'- gCCCCCguGGGCGGGCugcGGGUGcu--CGGGc -3' miRNA: 3'- -GGGGG--CCCGCUCG---UCCACauucGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 9456 | 0.71 | 0.22715 |
Target: 5'- gUCCCGGGCGGuGUccGGUGau-GCGGGg -3' miRNA: 3'- gGGGGCCCGCU-CGu-CCACauuCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 29620 | 0.7 | 0.232938 |
Target: 5'- uCgCCCGGGagaCGGGCGGGagacGGGCGGGa -3' miRNA: 3'- -GgGGGCCC---GCUCGUCCaca-UUCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 2369 | 0.7 | 0.232938 |
Target: 5'- -gCCCGGucgcgaccucGCGGGCccaaGGGUGUucGCGGGu -3' miRNA: 3'- ggGGGCC----------CGCUCG----UCCACAuuCGCCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 48000 | 0.7 | 0.257337 |
Target: 5'- cCCCUCGcGGCGcGguGGUGUcccAGGCuccGGGg -3' miRNA: 3'- -GGGGGC-CCGCuCguCCACA---UUCG---CCC- -5' |
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26431 | 5' | -60.6 | NC_005345.2 | + | 1741 | 0.7 | 0.262461 |
Target: 5'- uCCCCCGGGCaGGCAGGcgacguuugaccGUcGGCcauGGGg -3' miRNA: 3'- -GGGGGCCCGcUCGUCCa-----------CAuUCG---CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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