miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26431 5' -60.6 NC_005345.2 + 48343 1.1 0.000252
Target:  5'- gCCCCCGGGCGAGCAGGUGUAAGCGGGc -3'
miRNA:   3'- -GGGGGCCCGCUCGUCCACAUUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 21759 0.66 0.414264
Target:  5'- gCCCCugugcugcucgcuggCGGGCGAGcCGGG-GUcGGGUGGa -3'
miRNA:   3'- -GGGG---------------GCCCGCUC-GUCCaCA-UUCGCCc -5'
26431 5' -60.6 NC_005345.2 + 610 0.66 0.435298
Target:  5'- gCCaCCGGGUGAccauggugcggaucGCGuccucggccugcGGcGUGAGCGGGa -3'
miRNA:   3'- gGG-GGCCCGCU--------------CGU------------CCaCAUUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 23107 0.66 0.456936
Target:  5'- gCUCgCCGaGGCGAGCgAGGcgGcGAGuCGGGu -3'
miRNA:   3'- -GGG-GGC-CCGCUCG-UCCa-CaUUC-GCCC- -5'
26431 5' -60.6 NC_005345.2 + 8938 0.71 0.21594
Target:  5'- gCCCCCguGGGCGGGCugcGGGUGcu--CGGGc -3'
miRNA:   3'- -GGGGG--CCCGCUCG---UCCACauucGCCC- -5'
26431 5' -60.6 NC_005345.2 + 9456 0.71 0.22715
Target:  5'- gUCCCGGGCGGuGUccGGUGau-GCGGGg -3'
miRNA:   3'- gGGGGCCCGCU-CGu-CCACauuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 1741 0.7 0.262461
Target:  5'- uCCCCCGGGCaGGCAGGcgacguuugaccGUcGGCcauGGGg -3'
miRNA:   3'- -GGGGGCCCGcUCGUCCa-----------CAuUCG---CCC- -5'
26431 5' -60.6 NC_005345.2 + 21689 0.69 0.290727
Target:  5'- cCCCCCucaGGGCccGGgAGGUGcu-GCGGGg -3'
miRNA:   3'- -GGGGG---CCCGc-UCgUCCACauuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 36913 0.67 0.362451
Target:  5'- --aCCGGGUGAGCGGGUcaucgccacggcucgGgaGGCGGcGg -3'
miRNA:   3'- gggGGCCCGCUCGUCCA---------------CauUCGCC-C- -5'
26431 5' -60.6 NC_005345.2 + 9903 0.67 0.392995
Target:  5'- aCUCgGcGGCGAGCAGGaaUGAcCGGGg -3'
miRNA:   3'- gGGGgC-CCGCUCGUCCacAUUcGCCC- -5'
26431 5' -60.6 NC_005345.2 + 18149 0.67 0.375821
Target:  5'- aUCCCCGGcGuCGGGUAcagccucggcucGGUGUGGGCGu- -3'
miRNA:   3'- -GGGGGCC-C-GCUCGU------------CCACAUUCGCcc -5'
26431 5' -60.6 NC_005345.2 + 5053 0.68 0.327417
Target:  5'- aUCgaGGGCGAGCcGGUGUGcuGCGGu -3'
miRNA:   3'- gGGggCCCGCUCGuCCACAUu-CGCCc -5'
26431 5' -60.6 NC_005345.2 + 15339 0.73 0.166797
Target:  5'- -gCCgGGGCGuAGCGGGUGUGcggcgaaguaGGCGGc -3'
miRNA:   3'- ggGGgCCCGC-UCGUCCACAU----------UCGCCc -5'
26431 5' -60.6 NC_005345.2 + 30514 0.67 0.384344
Target:  5'- -aCCCGGGCGGGUAcc-GgcAGCGGa -3'
miRNA:   3'- ggGGGCCCGCUCGUccaCauUCGCCc -5'
26431 5' -60.6 NC_005345.2 + 37567 0.72 0.19494
Target:  5'- gCCCgaggCGGGCGcaGGCGGGcUGcAGGCGGGc -3'
miRNA:   3'- gGGG----GCCCGC--UCGUCC-ACaUUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 18831 0.69 0.302106
Target:  5'- cCUCCCGGGCcuggucaacgGGGCAGGcgagcagguGCGGGc -3'
miRNA:   3'- -GGGGGCCCG----------CUCGUCCacauu----CGCCC- -5'
26431 5' -60.6 NC_005345.2 + 39568 0.67 0.384344
Target:  5'- gUCCCGGccggucguGCGuucGCAGGUGc--GCGGGg -3'
miRNA:   3'- gGGGGCC--------CGCu--CGUCCACauuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 25734 0.66 0.419691
Target:  5'- -aCCCGGGCGucgcGguGGUGgcaGGCGa- -3'
miRNA:   3'- ggGGGCCCGCu---CguCCACau-UCGCcc -5'
26431 5' -60.6 NC_005345.2 + 9328 0.71 0.204684
Target:  5'- -aCCCGGGCGGcgaccagugcgacGCAuGGUGgcuGCGGGc -3'
miRNA:   3'- ggGGGCCCGCU-------------CGU-CCACauuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 48000 0.7 0.257337
Target:  5'- cCCCUCGcGGCGcGguGGUGUcccAGGCuccGGGg -3'
miRNA:   3'- -GGGGGC-CCGCuCguCCACA---UUCG---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.