miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26431 5' -60.6 NC_005345.2 + 610 0.66 0.435298
Target:  5'- gCCaCCGGGUGAccauggugcggaucGCGuccucggccugcGGcGUGAGCGGGa -3'
miRNA:   3'- gGG-GGCCCGCU--------------CGU------------CCaCAUUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 1741 0.7 0.262461
Target:  5'- uCCCCCGGGCaGGCAGGcgacguuugaccGUcGGCcauGGGg -3'
miRNA:   3'- -GGGGGCCCGcUCGUCCa-----------CAuUCG---CCC- -5'
26431 5' -60.6 NC_005345.2 + 2369 0.7 0.232938
Target:  5'- -gCCCGGucgcgaccucGCGGGCccaaGGGUGUucGCGGGu -3'
miRNA:   3'- ggGGGCC----------CGCUCG----UCCACAuuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 2685 0.69 0.283787
Target:  5'- gCCgCGGGCGuugucgauGUGGGUGUcGGCGGc -3'
miRNA:   3'- gGGgGCCCGCu-------CGUCCACAuUCGCCc -5'
26431 5' -60.6 NC_005345.2 + 3618 0.67 0.366594
Target:  5'- aCCCCaCGGcccGCGccGCAGGUGUGccguccgcagcccGGCGGc -3'
miRNA:   3'- -GGGG-GCC---CGCu-CGUCCACAU-------------UCGCCc -5'
26431 5' -60.6 NC_005345.2 + 4359 0.77 0.078334
Target:  5'- gCCUCGGGCGGGCGGGccgcucGGUGGGg -3'
miRNA:   3'- gGGGGCCCGCUCGUCCacau--UCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 4430 0.66 0.41067
Target:  5'- gCCaCgGGGCGAGaucgAGGUcGUGuggaggcuccGGCGGGg -3'
miRNA:   3'- gGG-GgCCCGCUCg---UCCA-CAU----------UCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 5053 0.68 0.327417
Target:  5'- aUCgaGGGCGAGCcGGUGUGcuGCGGu -3'
miRNA:   3'- gGGggCCCGCUCGuCCACAUu-CGCCc -5'
26431 5' -60.6 NC_005345.2 + 5548 0.74 0.131397
Target:  5'- gCCCCuuuCGGGuCGGuguGCGGGUGggAGGCGGGu -3'
miRNA:   3'- -GGGG---GCCC-GCU---CGUCCACa-UUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 6514 0.8 0.050188
Target:  5'- aCCCCGGGCcggacggcacgGGGCGGGgcgGGGCGGGg -3'
miRNA:   3'- gGGGGCCCG-----------CUCGUCCacaUUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 8938 0.71 0.21594
Target:  5'- gCCCCCguGGGCGGGCugcGGGUGcu--CGGGc -3'
miRNA:   3'- -GGGGG--CCCGCUCG---UCCACauucGCCC- -5'
26431 5' -60.6 NC_005345.2 + 9328 0.71 0.204684
Target:  5'- -aCCCGGGCGGcgaccagugcgacGCAuGGUGgcuGCGGGc -3'
miRNA:   3'- ggGGGCCCGCU-------------CGU-CCACauuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 9456 0.71 0.22715
Target:  5'- gUCCCGGGCGGuGUccGGUGau-GCGGGg -3'
miRNA:   3'- gGGGGCCCGCU-CGu-CCACauuCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 9903 0.67 0.392995
Target:  5'- aCUCgGcGGCGAGCAGGaaUGAcCGGGg -3'
miRNA:   3'- gGGGgC-CCGCUCGUCCacAUUcGCCC- -5'
26431 5' -60.6 NC_005345.2 + 13593 0.67 0.375821
Target:  5'- gUCCCGGGCGAGCccGa--AGGCGGc -3'
miRNA:   3'- gGGGGCCCGCUCGucCacaUUCGCCc -5'
26431 5' -60.6 NC_005345.2 + 14933 0.66 0.456936
Target:  5'- gCCCCGGGCGAacuGCugccccauGGUGacGGCGu- -3'
miRNA:   3'- gGGGGCCCGCU---CGu-------CCACauUCGCcc -5'
26431 5' -60.6 NC_005345.2 + 15339 0.73 0.166797
Target:  5'- -gCCgGGGCGuAGCGGGUGUGcggcgaaguaGGCGGc -3'
miRNA:   3'- ggGGgCCCGC-UCGUCCACAU----------UCGCCc -5'
26431 5' -60.6 NC_005345.2 + 18026 0.67 0.392124
Target:  5'- aCgCCGGGCGAGCgcAGGaacgcggccacguUGc-GGCGGGu -3'
miRNA:   3'- gGgGGCCCGCUCG--UCC-------------ACauUCGCCC- -5'
26431 5' -60.6 NC_005345.2 + 18149 0.67 0.375821
Target:  5'- aUCCCCGGcGuCGGGUAcagccucggcucGGUGUGGGCGu- -3'
miRNA:   3'- -GGGGGCC-C-GCUCGU------------CCACAUUCGCcc -5'
26431 5' -60.6 NC_005345.2 + 18789 0.67 0.400005
Target:  5'- gCCgCGGGCugccgucGGGCAGG-GUGAcggcggcGCGGGc -3'
miRNA:   3'- gGGgGCCCG-------CUCGUCCaCAUU-------CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.