miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26441 3' -68.1 NC_005357.1 + 1870 0.68 0.119086
Target:  5'- aGGUucaGCCCguGGCCGGCGCUgGCCGg-- -3'
miRNA:   3'- cCCGc--CGGG--CCGGCCGCGG-CGGCauc -5'
26441 3' -68.1 NC_005357.1 + 16615 0.69 0.092489
Target:  5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5'
26441 3' -68.1 NC_005357.1 + 25485 0.66 0.162312
Target:  5'- cGGCGGCaCGcuGCUGGaCGgCGCCGUGc -3'
miRNA:   3'- cCCGCCGgGC--CGGCC-GCgGCGGCAUc -5'
26441 3' -68.1 NC_005357.1 + 31732 0.67 0.146525
Target:  5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3'
miRNA:   3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5'
26441 3' -68.1 NC_005357.1 + 31945 0.67 0.135617
Target:  5'- --aCGGCCCguucgGGCCGGUGCUGCgCGa-- -3'
miRNA:   3'- cccGCCGGG-----CCGGCCGCGGCG-GCauc -5'
26441 3' -68.1 NC_005357.1 + 36027 0.7 0.084497
Target:  5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3'
miRNA:   3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 14724 0.67 0.142803
Target:  5'- cGGCGGCgagCCGcuGCCGGCGCgCgGCCuGUAu -3'
miRNA:   3'- cCCGCCG---GGC--CGGCCGCG-G-CGG-CAUc -5'
26441 3' -68.1 NC_005357.1 + 10062 0.7 0.080108
Target:  5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3'
miRNA:   3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5'
26441 3' -68.1 NC_005357.1 + 35187 0.7 0.073339
Target:  5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3'
miRNA:   3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 33210 0.67 0.135617
Target:  5'- cGGGCGcGCCgcagaacgUGcGCC-GCGCCGCCGa-- -3'
miRNA:   3'- -CCCGC-CGG--------GC-CGGcCGCGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 40290 0.66 0.166491
Target:  5'- cGGCGGCgCGGuugaCCGGCuGCUGCaCGa-- -3'
miRNA:   3'- cCCGCCGgGCC----GGCCG-CGGCG-GCauc -5'
26441 3' -68.1 NC_005357.1 + 8170 0.67 0.125461
Target:  5'- -uGCGGCCCaGGaaGGCGCUGgCGUc- -3'
miRNA:   3'- ccCGCCGGG-CCggCCGCGGCgGCAuc -5'
26441 3' -68.1 NC_005357.1 + 8215 0.67 0.139167
Target:  5'- uGGCGGCCaGuuCGuGCGCgGCCGUGc -3'
miRNA:   3'- cCCGCCGGgCcgGC-CGCGgCGGCAUc -5'
26441 3' -68.1 NC_005357.1 + 16802 0.66 0.150335
Target:  5'- aGGUGGacgcgcugCUGGCgaccGCGCCGCCGUGGu -3'
miRNA:   3'- cCCGCCg-------GGCCGgc--CGCGGCGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 36912 0.66 0.157824
Target:  5'- uGGGCGG-CCGGCgugccuacgacuuUGGCaGCauCGCCGUAc -3'
miRNA:   3'- -CCCGCCgGGCCG-------------GCCG-CG--GCGGCAUc -5'
26441 3' -68.1 NC_005357.1 + 30402 0.68 0.107233
Target:  5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3'
miRNA:   3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 42271 0.69 0.093723
Target:  5'- gGGGCGcauccGCCUGcggggaaGCCuGGCGCCacGCCGUAGc -3'
miRNA:   3'- -CCCGC-----CGGGC-------CGG-CCGCGG--CGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 19872 0.68 0.122235
Target:  5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3'
miRNA:   3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 29088 0.66 0.166491
Target:  5'- cGGGCgccgaggucaGGCCCGuGCgGGacuuGCUGCCGg-- -3'
miRNA:   3'- -CCCG----------CCGGGC-CGgCCg---CGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 22490 0.66 0.166491
Target:  5'- gGGGCgGGCUgGGCUGGUcauGCCcGCCa--- -3'
miRNA:   3'- -CCCG-CCGGgCCGGCCG---CGG-CGGcauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.